Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AB3Q54_RS00040 | Genome accession | NZ_CP163515 |
| Coordinates | 9353..9889 (+) | Length | 178 a.a. |
| NCBI ID | WP_172573726.1 | Uniprot ID | - |
| Organism | Ligilactobacillus agilis strain W70 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4353..14889
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3Q54_RS00025 (AB3Q54_00025) | gyrB | 4379..6343 (+) | 1965 | WP_056975567.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| AB3Q54_RS00030 (AB3Q54_00030) | gyrA | 6362..8830 (+) | 2469 | WP_369351752.1 | DNA gyrase subunit A | - |
| AB3Q54_RS00035 (AB3Q54_00035) | rpsF | 9013..9303 (+) | 291 | WP_050611467.1 | 30S ribosomal protein S6 | - |
| AB3Q54_RS00040 (AB3Q54_00040) | ssb | 9353..9889 (+) | 537 | WP_172573726.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3Q54_RS00045 (AB3Q54_00045) | rpsR | 9910..10146 (+) | 237 | WP_006500881.1 | 30S ribosomal protein S18 | - |
| AB3Q54_RS00050 (AB3Q54_00050) | - | 10405..11865 (+) | 1461 | WP_369351755.1 | MFS transporter | - |
| AB3Q54_RS00055 (AB3Q54_00055) | - | 12099..13259 (+) | 1161 | WP_369351756.1 | CynX/NimT family MFS transporter | - |
| AB3Q54_RS00060 (AB3Q54_00060) | - | 13611..14723 (+) | 1113 | WP_204784141.1 | PTS transporter subunit IIC | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19445.11 Da Isoelectric Point: 4.5296
>NTDB_id=1030387 AB3Q54_RS00040 WP_172573726.1 9353..9889(+) (ssb) [Ligilactobacillus agilis strain W70]
MINNVVLVGRLTRDPDLRFTPSGVATANFTLAVDRNFTNQQGQRDADFINCVVWRKAAENFANYTHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVSNFSFLESKAQADAYRQQNGGGQGYAPQGQGYQANPYGTPAANQAQPSGFTNNNTSEAQPSAD
PFADNGDTIDIADNDLPF
MINNVVLVGRLTRDPDLRFTPSGVATANFTLAVDRNFTNQQGQRDADFINCVVWRKAAENFANYTHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVSNFSFLESKAQADAYRQQNGGGQGYAPQGQGYQANPYGTPAANQAQPSGFTNNNTSEAQPSAD
PFADNGDTIDIADNDLPF
Nucleotide
Download Length: 537 bp
>NTDB_id=1030387 AB3Q54_RS00040 WP_172573726.1 9353..9889(+) (ssb) [Ligilactobacillus agilis strain W70]
TTGATTAACAATGTCGTACTTGTAGGTCGCCTGACCAGAGATCCTGATTTACGGTTCACCCCCTCTGGTGTTGCAACTGC
TAACTTTACGTTGGCGGTTGACCGCAACTTTACTAACCAACAAGGCCAAAGAGATGCAGATTTTATTAACTGTGTTGTTT
GGCGTAAGGCTGCGGAAAACTTTGCTAACTATACCCACAAAGGTTCTTTAGTTGGAATCGAAGGCCGGATTCAAACACGG
AATTACGAAAACCAACAAGGCCAACGGGTGTACGTTACAGAAGTGGTAGTATCAAACTTCAGCTTCCTCGAATCTAAGGC
ACAAGCCGATGCTTACCGGCAACAAAACGGCGGTGGTCAAGGTTATGCTCCACAAGGTCAAGGCTATCAAGCTAACCCAT
ATGGGACACCAGCTGCAAACCAAGCGCAACCAAGTGGCTTTACTAACAACAATACTAGTGAAGCACAACCAAGTGCGGAT
CCATTTGCAGATAACGGTGATACGATTGATATCGCGGATAATGACCTACCATTCTAG
TTGATTAACAATGTCGTACTTGTAGGTCGCCTGACCAGAGATCCTGATTTACGGTTCACCCCCTCTGGTGTTGCAACTGC
TAACTTTACGTTGGCGGTTGACCGCAACTTTACTAACCAACAAGGCCAAAGAGATGCAGATTTTATTAACTGTGTTGTTT
GGCGTAAGGCTGCGGAAAACTTTGCTAACTATACCCACAAAGGTTCTTTAGTTGGAATCGAAGGCCGGATTCAAACACGG
AATTACGAAAACCAACAAGGCCAACGGGTGTACGTTACAGAAGTGGTAGTATCAAACTTCAGCTTCCTCGAATCTAAGGC
ACAAGCCGATGCTTACCGGCAACAAAACGGCGGTGGTCAAGGTTATGCTCCACAAGGTCAAGGCTATCAAGCTAACCCAT
ATGGGACACCAGCTGCAAACCAAGCGCAACCAAGTGGCTTTACTAACAACAATACTAGTGAAGCACAACCAAGTGCGGAT
CCATTTGCAGATAACGGTGATACGATTGATATCGCGGATAATGACCTACCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.777 |
100 |
0.601 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.889 |
100 |
0.545 |