Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   AB6M99_RS07425 Genome accession   NZ_CP163513
Coordinates   1539478..1540485 (-) Length   335 a.a.
NCBI ID   WP_121834848.1    Uniprot ID   -
Organism   Streptococcus hillyeri strain S23-3001-2     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1534478..1545485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6M99_RS07410 (AB6M99_07410) - 1536361..1536675 (-) 315 WP_121834845.1 MazG-like protein -
  AB6M99_RS07415 (AB6M99_07415) - 1536968..1538299 (-) 1332 WP_121834846.1 glycosyltransferase family 4 protein -
  AB6M99_RS07420 (AB6M99_07420) - 1538315..1539352 (-) 1038 WP_121834847.1 glycosyltransferase family 4 protein -
  AB6M99_RS07425 (AB6M99_07425) ccpA 1539478..1540485 (-) 1008 WP_121834848.1 catabolite control protein A Regulator
  AB6M99_RS07430 (AB6M99_07430) - 1540698..1541774 (+) 1077 WP_121834849.1 Xaa-Pro peptidase family protein -
  AB6M99_RS07435 (AB6M99_07435) - 1541827..1542690 (+) 864 WP_121834850.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36449.59 Da        Isoelectric Point: 6.0623

>NTDB_id=1030301 AB6M99_RS07425 WP_121834848.1 1539478..1540485(-) (ccpA) [Streptococcus hillyeri strain S23-3001-2]
MSTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRQKVLEVIARLDYRPNAVARGLASKKTTTVGVVLPNLANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDEKEVAVVNTLFAKQVDGIIFMGNHLTDKIRAEFSRSRTPVVLAGTVDLEHQLPS
VNIDHSAAITDGVNVLAKRHKQIAFISGPLIDDINGKVRLSGYKEGLSSNGLTFDEGLVFEANYRYKEGFALAQRVLNAG
ATAAVVAEDELAAGLLNGLFEAGKSVPEDFEIITSNDSPIVQYTRPNMTSISQPIYDLGAVAMRMLTKIMNKEELNQKEI
LLKHGLKERGTTKGL

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=1030301 AB6M99_RS07425 WP_121834848.1 1539478..1540485(-) (ccpA) [Streptococcus hillyeri strain S23-3001-2]
ATGAGTACAGATGATACAATTACGATTTATGACGTTGCCCGTGAAGCCGGTGTTTCCATGGCTACAGTCAGTCGTGTTGT
TAATGGAAATAAAAACGTTAAAGAAAATACGCGCCAAAAAGTTTTAGAAGTGATTGCCCGTTTGGACTATCGTCCTAATG
CGGTTGCTCGTGGTTTGGCTAGCAAGAAAACGACGACAGTTGGTGTTGTTTTACCTAACCTTGCTAATTCTTACTTCTCG
ATTTTGGCAAAAGGGATTGATGATATTGCTGCGATGTACAAGTACAATATTGTCCTTGCCTCAAGTGACGAAGATGATGA
AAAAGAAGTAGCTGTTGTTAACACGCTTTTCGCTAAGCAAGTTGACGGTATTATCTTTATGGGAAATCATCTTACAGATA
AGATTAGAGCTGAATTTTCACGCTCACGAACACCAGTTGTATTGGCTGGAACTGTTGACTTGGAGCACCAATTGCCTAGC
GTTAATATTGATCACAGTGCGGCGATCACAGACGGTGTCAATGTGTTGGCAAAACGTCATAAACAAATCGCATTCATCTC
AGGACCACTTATTGACGACATCAATGGCAAAGTGCGTCTTTCTGGTTATAAAGAAGGTCTTTCTAGCAATGGACTAACTT
TTGATGAAGGTCTAGTTTTTGAAGCAAATTATAGATACAAAGAAGGCTTCGCTTTAGCACAACGTGTTCTTAACGCAGGT
GCTACCGCAGCTGTTGTTGCTGAAGACGAATTGGCTGCCGGTCTTTTAAATGGTCTCTTTGAAGCAGGTAAATCAGTGCC
AGAGGATTTTGAAATCATCACAAGTAACGATTCGCCGATTGTGCAATACACACGCCCTAACATGACCTCTATTAGCCAAC
CGATCTATGATTTGGGAGCAGTAGCCATGCGCATGTTAACAAAAATCATGAACAAAGAAGAATTGAATCAAAAAGAAATC
CTTTTAAAACATGGTCTTAAAGAACGTGGCACAACAAAAGGTCTTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

75.075

99.403

0.746
  ccpA Streptococcus gordonii str. Challis substr. CH1

74.775

99.403

0.743
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.006

98.806

0.573

Multiple sequence alignment