Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   AB5991_RS20040 Genome accession   NZ_CP163447
Coordinates   3734004..3734123 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain SD2     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3729004..3739123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5991_RS20015 (AB5991_20015) albG 3729168..3729869 (+) 702 WP_014481222.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  AB5991_RS20020 (AB5991_20020) ywhL 3729875..3731251 (-) 1377 WP_014481223.1 YncE family protein -
  AB5991_RS20025 (AB5991_20025) ywhK 3731290..3732645 (-) 1356 WP_014481224.1 YncE family protein -
  AB5991_RS20030 (AB5991_20030) - 3732642..3732872 (-) 231 Protein_3887 hypothetical protein -
  AB5991_RS20035 (AB5991_20035) rapF 3732875..3734020 (+) 1146 WP_014481226.1 response regulator aspartate phosphatase RapF Regulator
  AB5991_RS20040 (AB5991_20040) phrF 3734004..3734123 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  AB5991_RS20045 (AB5991_20045) - 3734221..3734648 (+) 428 Protein_3890 YbaK/EbsC family protein -
  AB5991_RS20050 (AB5991_20050) speB 3734713..3735585 (-) 873 WP_003227545.1 agmatinase -
  AB5991_RS20055 (AB5991_20055) speE 3735646..3736476 (-) 831 WP_003227543.1 spermidine synthase -
  AB5991_RS20060 (AB5991_20060) pbpG 3736678..3738753 (+) 2076 WP_014481227.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=1029891 AB5991_RS20040 WP_009968329.1 3734004..3734123(+) (phrF) [Bacillus subtilis strain SD2]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1029891 AB5991_RS20040 WP_009968329.1 3734004..3734123(+) (phrF) [Bacillus subtilis strain SD2]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment