Detailed information NTG1029890

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AB5991_RS20035
• Genome accession: NZ_CP163447
• Coordinates: 3732875..3734020 (+)
• Length: 381 a.a.
• NCBI ID: WP_014481226.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain SD2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3727875..3739020

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5991_RS20010 (AB5991_20010)	albF	3727891..3729171 (+)	1281	WP_014481221.1	pitrilysin family protein	-
AB5991_RS20015 (AB5991_20015)	albG	3729168..3729869 (+)	702	WP_014481222.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
AB5991_RS20020 (AB5991_20020)	ywhL	3729875..3731251 (-)	1377	WP_014481223.1	YncE family protein	-
AB5991_RS20025 (AB5991_20025)	ywhK	3731290..3732645 (-)	1356	WP_014481224.1	YncE family protein	-
AB5991_RS20030 (AB5991_20030)	-	3732642..3732872 (-)	231	Protein_3887	hypothetical protein	-
AB5991_RS20035 (AB5991_20035)	rapF	3732875..3734020 (+)	1146	WP_014481226.1	response regulator aspartate phosphatase RapF	Regulator
AB5991_RS20040 (AB5991_20040)	phrF	3734004..3734123 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
AB5991_RS20045 (AB5991_20045)	-	3734221..3734648 (+)	428	Protein_3890	YbaK/EbsC family protein	-
AB5991_RS20050 (AB5991_20050)	speB	3734713..3735585 (-)	873	WP_003227545.1	agmatinase	-
AB5991_RS20055 (AB5991_20055)	speE	3735646..3736476 (-)	831	WP_003227543.1	spermidine synthase	-
AB5991_RS20060 (AB5991_20060)	pbpG	3736678..3738753 (+)	2076	WP_014481227.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45627.12 Da
• Isoelectric Point: 5.1503

>NTDB_id=1029890 AB5991_RS20035 WP_014481226.1 3732875..3734020(+) (rapF) [Bacillus subtilis strain SD2]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=1029890 AB5991_RS20035 WP_014481226.1 3732875..3734020(+) (rapF) [Bacillus subtilis strain SD2]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTACGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	99.738	100	0.997
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572