Detailed information NTG1027963

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4L27_RS06595
• Genome accession: NZ_CP162907
• Coordinates: 1435155..1436024 (+)
• Length: 289 a.a.
• NCBI ID: WP_012841418.1
• Uniprot ID: -
• Organism: Vibrio diabolicus strain 3098
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1430155..1441024

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4L27_RS06575 (AB4L27_06575)	nadC	1430555..1431442 (+)	888	WP_104969780.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AB4L27_RS06580 (AB4L27_06580)	pilA	1431705..1432154 (+)	450	WP_104969781.1	pilin	Machinery gene
AB4L27_RS06585 (AB4L27_06585)	pilB	1432158..1433843 (+)	1686	WP_104969782.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB4L27_RS06590 (AB4L27_06590)	pilC	1433867..1435090 (+)	1224	WP_104969783.1	type II secretion system F family protein	Machinery gene
AB4L27_RS06595 (AB4L27_06595)	pilD	1435155..1436024 (+)	870	WP_012841418.1	A24 family peptidase	Machinery gene
AB4L27_RS06600 (AB4L27_06600)	coaE	1436025..1436639 (+)	615	WP_047008979.1	dephospho-CoA kinase	-
AB4L27_RS06605 (AB4L27_06605)	zapD	1436667..1437407 (+)	741	WP_012841416.1	cell division protein ZapD	-
AB4L27_RS06610 (AB4L27_06610)	yacG	1437555..1437749 (+)	195	WP_005396692.1	DNA gyrase inhibitor YacG	-
AB4L27_RS06615 (AB4L27_06615)	rplS	1438409..1438762 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
AB4L27_RS06620 (AB4L27_06620)	trmD	1438804..1439547 (-)	744	WP_005425529.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AB4L27_RS06625 (AB4L27_06625)	rimM	1439575..1440123 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
AB4L27_RS06630 (AB4L27_06630)	rpsP	1440153..1440401 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32523.70 Da
• Isoelectric Point: 7.0195

>NTDB_id=1027963 AB4L27_RS06595 WP_012841418.1 1435155..1436024(+) (pilD) [Vibrio diabolicus strain 3098]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=1027963 AB4L27_RS06595 WP_012841418.1 1435155..1436024(+) (pilD) [Vibrio diabolicus strain 3098]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AATTACTAGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAACAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.593	93.426	0.491
pilD	Acinetobacter nosocomialis M2	52.222	93.426	0.488
pilD	Neisseria gonorrhoeae MS11	48.551	95.502	0.464