Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   AW03_RS14450 Genome accession   NZ_CP007173
Coordinates   2806475..2807479 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis HJ5     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2801475..2812479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW03_RS14425 (AW03_027870) acuA 2802402..2803034 (+) 633 WP_003229296.1 acetoin utilization protein acetyltransferase AcuA -
  AW03_RS14430 (AW03_027880) acuB 2803061..2803705 (+) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  AW03_RS14435 (AW03_027890) acuC 2803702..2804865 (+) 1164 WP_015483569.1 acetoin utilization protein AcuC -
  AW03_RS14440 (AW03_027900) motS 2804876..2805604 (-) 729 WP_003229290.1 flagellar motor protein MotS -
  AW03_RS14445 (AW03_027910) motP 2805594..2806412 (-) 819 WP_014477672.1 flagellar motor protein MotP -
  AW03_RS14450 (AW03_027920) ccpA 2806475..2807479 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  AW03_RS14455 (AW03_027930) aroX 2807755..2808831 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  AW03_RS14460 (AW03_027940) ytxJ 2809069..2809395 (-) 327 WP_015251445.1 bacillithiol system redox-active protein YtxJ -
  AW03_RS14465 (AW03_027950) ytxH 2809419..2809874 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  AW03_RS14470 (AW03_027960) ytxG 2809905..2810327 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  AW03_RS14475 (AW03_027970) murC 2810490..2811788 (-) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=102789 AW03_RS14450 WP_003229285.1 2806475..2807479(-) (ccpA) [Bacillus subtilis HJ5]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=102789 AW03_RS14450 WP_003229285.1 2806475..2807479(-) (ccpA) [Bacillus subtilis HJ5]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGCGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCA
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCCCCAGTGCCGATCGTACTTGCTGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTGGGCATTATCCATGCTGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTTATGGTTCGCCCGCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATTGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTAAGAAAGTCAACCAAGTCATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539
  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503