Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AB4073_RS17985 Genome accession   NZ_CP162643
Coordinates   3819814..3821226 (+) Length   470 a.a.
NCBI ID   WP_368678162.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 128-92     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3814814..3826226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4073_RS17965 (AB4073_17965) thrC 3815063..3816202 (+) 1140 WP_002048893.1 threonine synthase -
  AB4073_RS17970 (AB4073_17970) pbpG 3816316..3817362 (-) 1047 WP_016144106.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  AB4073_RS17975 (AB4073_17975) - 3817575..3818210 (+) 636 WP_002121174.1 response regulator -
  AB4073_RS17980 (AB4073_17980) pilS 3818221..3819789 (+) 1569 WP_368678161.1 PAS domain-containing sensor histidine kinase Regulator
  AB4073_RS17985 (AB4073_17985) pilR 3819814..3821226 (+) 1413 WP_368678162.1 sigma-54-dependent transcriptional regulator Regulator
  AB4073_RS17990 (AB4073_17990) - 3821230..3822414 (-) 1185 WP_031947156.1 S41 family peptidase -
  AB4073_RS17995 (AB4073_17995) gpmI 3822430..3823977 (-) 1548 WP_368678163.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  AB4073_RS18000 (AB4073_18000) lptG 3824104..3825174 (-) 1071 WP_016144101.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52656.82 Da        Isoelectric Point: 6.5573

>NTDB_id=1027783 AB4073_RS17985 WP_368678162.1 3819814..3821226(+) (pilR) [Acinetobacter lactucae strain 128-92]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALKQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLTMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIILPPLRDRGGDILL
LANHFIQKVCTEWGISSKQLTACAETYLLQQDFPGNVRELRNMIERAITLSDDECIDLTHLAPPLRGSSVSPQSVTKQLN
QTPTVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=1027783 AB4073_RS17985 WP_368678162.1 3819814..3821226(+) (pilR) [Acinetobacter lactucae strain 128-92]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTACGATGCATGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGTTTAGAATTGGTTAAACATGTTTCTCAAACTTACCCCCACACCCCCATT
GCAGTTTTAACTGCATACGGAAATATGGACATTGCAATTGCTGCATTAAAAGCGGGAGCTTTTGATTTTGTCAGCAAACC
GATTAACCAAATTCATTTAGATCAGTTGTTAAAAAAGGCGCTTAAACAGCCAAAACCAGAGCATGAGTTTGGTGAAACAA
CTTTAGAAAATGACTTATTAATTGGGCGTTCACCACCGATACAAAACTTACGAACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCGCCTGTATTTGTTACAGGCGAGTCTGGTACGGGTAAAGAAGTTGTTGCCAATCTTATTCACCGCTTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGGAGCTTTACTGGCGCGACTCAAGACAAACAAGGTCTTATTTTATCGGCACACGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCGTTAACCATGCAAGTTAAATTGCTTCGCGCAGTACAAGAGAAAAAAATTCGCCCAGTAGGTTCTGA
TCAGGAAATTGATGTTGATTTTCGAGTAATTAGTGCGAGTCACCAAGATTTAGATTTGTTAGTCCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATTTTGCCGCCACTGCGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAACCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGTGTGCTGAAACTTA
TTTATTACAGCAAGACTTTCCGGGTAATGTGCGTGAATTAAGAAATATGATTGAACGAGCTATTACTTTAAGTGATGATG
AATGTATTGATTTAACCCACTTAGCGCCTCCTCTTAGAGGTAGTAGTGTTAGCCCGCAAAGCGTAACGAAACAATTAAAT
CAAACACCGACTGTTCAGACTCACCCAAAATTTCCAATGGAAGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCATTAAACATGACGCATTGGAATCGAACTTTGGCAGCTAAAAAGCTAGGAATGACATTTCGTTCTTTGC
GCTATCGACTCAAAAAGTTTGGTTTGGATACCGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

85.835

100

0.864
  pilR Pseudomonas aeruginosa PAK

50.877

97.021

0.494

Multiple sequence alignment