Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AB4073_RS17980 Genome accession   NZ_CP162643
Coordinates   3818221..3819789 (+) Length   522 a.a.
NCBI ID   WP_368678161.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 128-92     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3813221..3824789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4073_RS17960 (AB4073_17960) - 3813707..3815008 (+) 1302 WP_016142448.1 homoserine dehydrogenase -
  AB4073_RS17965 (AB4073_17965) thrC 3815063..3816202 (+) 1140 WP_002048893.1 threonine synthase -
  AB4073_RS17970 (AB4073_17970) pbpG 3816316..3817362 (-) 1047 WP_016144106.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  AB4073_RS17975 (AB4073_17975) - 3817575..3818210 (+) 636 WP_002121174.1 response regulator -
  AB4073_RS17980 (AB4073_17980) pilS 3818221..3819789 (+) 1569 WP_368678161.1 PAS domain-containing sensor histidine kinase Regulator
  AB4073_RS17985 (AB4073_17985) pilR 3819814..3821226 (+) 1413 WP_368678162.1 sigma-54-dependent transcriptional regulator Regulator
  AB4073_RS17990 (AB4073_17990) - 3821230..3822414 (-) 1185 WP_031947156.1 S41 family peptidase -
  AB4073_RS17995 (AB4073_17995) gpmI 3822430..3823977 (-) 1548 WP_368678163.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59007.59 Da        Isoelectric Point: 6.5700

>NTDB_id=1027782 AB4073_RS17980 WP_368678161.1 3818221..3819789(+) (pilS) [Acinetobacter lactucae strain 128-92]
MQFPINSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDTSLQQPTLYSYTLLGYSLLSLLQLLCFKFIATQATKQ
LILFFVGDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLVITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYNIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDLEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFIKTLLDEDLSDVK
HAIQLRSSDLSLKILFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIACPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=1027782 AB4073_RS17980 WP_368678161.1 3818221..3819789(+) (pilS) [Acinetobacter lactucae strain 128-92]
ATGCAATTTCCCATAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACACTAGTCTACAACAACCCACTTTATATTCTT
ATACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGCTTTAAGTTTATTGCCACTCAGGCAACAAAGCAG
CTCATTTTATTTTTTGTAGGTGATATTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATTTACAACTCAG
CTTGCTCTATGTTATTGCCATATTTACTTCAGCAATTTTACTTAGCGCAAGAATGTCGCTGGTCATTACATTACTTGCAG
TTATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCTTTA
TTGGCCTTCTTGTTTTTCGTAGTACACGGCATCGGGCAAATTGCGGTCCAGCGCTTTAAGTTACTTGAGGCGCTGACTTT
CCACCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATTTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTACAACATTGTTTTAAGCAACCCAGCAGCATGTTCACTTTTGGGGATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCTAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACCTAAAAGAAGGTGACCGATTTAT
TTTTGAGTCTCGGCTTTCGGCCTACTCTATTAATATTAAAGTGCAGCATCTTTTAGTACCACAACAAGCGTTGACACTAC
TCATTTTACAAGATGCGCAGCAAATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTAGGGCAACTCTCAGCAAGT
ATTGCCCATGAAATCCGTAATCCTCTTGCAGCGATTGTGCAAGCAAATGAACTACTTAAAGACAGTGATTTAGAACAACA
AAATACTTTACGCAATATGATTGGCAAGCAAACCAAACGCATTGATAGTATTGTTCAAGACACGTTAGGGCTTGCCCGTA
GTGAAAGAACATATCCAATCCAGATTGAATTAAACGACTTCATAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATGCGATCCAGCTTAGAAGCTCTGATTTATCTTTAAAGATATTGTTTGATGAAAAGCAGCTCAGACAAGTGCTGATTAA
CCTAGTTAGAAATGCTTTACGACACAATGCACCCGACTCGCCCTATGTTCTGATCAATATTCATTCACAAACAAATAAAA
TCTATATTGATGTGATCGATTACGGTGAAGGGGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCCGAATAGCGTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

93.295

100

0.933

Multiple sequence alignment