Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AB4073_RS16280 Genome accession   NZ_CP162643
Coordinates   3456327..3456731 (-) Length   134 a.a.
NCBI ID   WP_368678060.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 128-92     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3451327..3461731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4073_RS16250 (AB4073_16250) - 3451411..3451680 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  AB4073_RS16255 (AB4073_16255) rapZ 3451677..3452528 (-) 852 WP_005066272.1 RNase adapter RapZ -
  AB4073_RS16260 (AB4073_16260) panC 3452552..3453400 (-) 849 WP_031947380.1 pantoate--beta-alanine ligase -
  AB4073_RS16265 (AB4073_16265) panB 3453404..3454213 (-) 810 WP_216967307.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  AB4073_RS16270 (AB4073_16270) folK 3454259..3454741 (-) 483 WP_016144358.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  AB4073_RS16275 (AB4073_16275) pcnB 3454738..3456201 (-) 1464 WP_031947378.1 polynucleotide adenylyltransferase PcnB -
  AB4073_RS16280 (AB4073_16280) comEA 3456327..3456731 (-) 405 WP_368678060.1 ComEA family DNA-binding protein Machinery gene
  AB4073_RS16285 (AB4073_16285) mazG 3456700..3457506 (-) 807 WP_368678061.1 nucleoside triphosphate pyrophosphohydrolase -
  AB4073_RS16290 (AB4073_16290) - 3457619..3458392 (+) 774 WP_368678062.1 SDR family oxidoreductase -
  AB4073_RS16295 (AB4073_16295) - 3458441..3460747 (-) 2307 WP_002117181.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15456.73 Da        Isoelectric Point: 10.4153

>NTDB_id=1027771 AB4073_RS16280 WP_368678060.1 3456327..3456731(-) (comEA) [Acinetobacter lactucae strain 128-92]
MQLSMNLWKNKHYIFIALFWSLISSTFVQAQSFDQNFKEWKAKQQMYDQKLSMQHSSHSNVSKSSAMTDSSGQIHLNQAN
LDELQKLKGIGEKKAQAILEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKVRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1027771 AB4073_RS16280 WP_368678060.1 3456327..3456731(-) (comEA) [Acinetobacter lactucae strain 128-92]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAACACTATATTTTTATTGCTCTATTTTGGAGCCTGATTTCATCAACCTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCGAAGCAACAGATGTATGATCAGAAGTTGAGTATGC
AGCATTCCTCTCATTCGAATGTTTCAAAAAGCTCAGCTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCTAAT
CTTGATGAGCTGCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTTTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAAAATAAAGTGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

69.343

100

0.709
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

41.129

92.537

0.381

Multiple sequence alignment