Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AB4073_RS13585 Genome accession   NZ_CP162643
Coordinates   2880351..2881058 (+) Length   235 a.a.
NCBI ID   WP_016141682.1    Uniprot ID   A0A151YV95
Organism   Acinetobacter lactucae strain 128-92     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2875351..2886058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4073_RS13560 (AB4073_13560) clpB 2875504..2878083 (-) 2580 WP_005070314.1 ATP-dependent chaperone ClpB -
  AB4073_RS13565 (AB4073_13565) - 2878383..2879192 (+) 810 WP_171430117.1 M23 family metallopeptidase -
  AB4073_RS13570 (AB4073_13570) - 2879189..2879394 (-) 206 Protein_2653 hypothetical protein -
  AB4073_RS13575 (AB4073_13575) - 2879490..2879912 (-) 423 WP_016143298.1 OsmC family protein -
  AB4073_RS13580 (AB4073_13580) - 2879991..2880110 (-) 120 WP_078224862.1 hypothetical protein -
  AB4073_RS13585 (AB4073_13585) crp 2880351..2881058 (+) 708 WP_016141682.1 cAMP-activated global transcriptional regulator CRP Regulator
  AB4073_RS13590 (AB4073_13590) - 2881218..2882267 (+) 1050 WP_216969217.1 NADP(H)-dependent aldo-keto reductase -
  AB4073_RS13595 (AB4073_13595) - 2882323..2883102 (-) 780 WP_368677868.1 M48 family metallopeptidase -
  AB4073_RS13600 (AB4073_13600) - 2883218..2883535 (-) 318 WP_031947796.1 hypothetical protein -
  AB4073_RS13605 (AB4073_13605) - 2883657..2884976 (-) 1320 WP_002121613.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26522.10 Da        Isoelectric Point: 4.6573

>NTDB_id=1027767 AB4073_RS13585 WP_016141682.1 2880351..2881058(+) (crp) [Acinetobacter lactucae strain 128-92]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENPVSDDDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1027767 AB4073_RS13585 WP_016141682.1 2880351..2881058(+) (crp) [Acinetobacter lactucae strain 128-92]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCCCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGATGATGAACGTGAAATTGTTGTTGCGTATTTAAATCCGGGCGATTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCCGAAGTTCGTACTCGTGATGTCTGTGAAATTGCAGA
GATCTCTTATGACAACTTCCACGAACTTAGCAAACAATATCCAGACCTAAGCTATGCTGTTTTTGCACAATTAGTTCGCC
GTCTAAAAAATACGACTCGTAAGATGACAGATCTTGCGTTCATTGATGTTTCTGGTCGTATTGCTCGTTGTTTAATCGAT
CTATCTTCTCAGCCAGAAGCAATGATTTTGCCGAATGGTCGTCAAATTCGTATTACTCGTCAAGAAATTGGCCGTATTGT
TGGATGCTCACGTGAGATGGTTGGCCGTGTACTCAAAACCTTAGAAGATCAAGGTATGATCCAAACTGATGGTAAAGCCA
TTCTTATTTTTGATGCTTCATTAGAAGAAAACCCTGTTTCTGATGATGACTACGACGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YV95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

97.872

100

0.979
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404

Multiple sequence alignment