Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB3456_RS13585 Genome accession   NZ_CP162632
Coordinates   2805031..2805546 (-) Length   171 a.a.
NCBI ID   WP_017723386.1    Uniprot ID   A0A418IN43
Organism   Staphylococcus pseudoxylosus strain Hao 2022     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2800031..2810546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3456_RS13585 (AB3456_13585) ssbA 2805031..2805546 (-) 516 WP_017723386.1 single-stranded DNA-binding protein Machinery gene
  AB3456_RS13590 (AB3456_13590) rpsF 2805565..2805870 (-) 306 WP_017723387.1 30S ribosomal protein S6 -
  AB3456_RS13595 (AB3456_13595) - 2806298..2807104 (+) 807 WP_107552514.1 GH25 family lysozyme -
  AB3456_RS13600 (AB3456_13600) ychF 2807254..2808351 (-) 1098 WP_017723389.1 redox-regulated ATPase YchF -
  AB3456_RS13605 (AB3456_13605) - 2808351..2808566 (-) 216 WP_017723390.1 DUF951 domain-containing protein -
  AB3456_RS13610 (AB3456_13610) - 2808588..2809472 (-) 885 WP_017723391.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19089.61 Da        Isoelectric Point: 4.9056

>NTDB_id=1027736 AB3456_RS13585 WP_017723386.1 2805031..2805546(-) (ssbA) [Staphylococcus pseudoxylosus strain Hao 2022]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLFKGSLAGVDGRIQSR
SYENQEGRRVFVTEVVCDSVQFLEPKNQNQRHGQESNNNFQNFGGQQSGQNTASYQNNNNNNNNTSNNNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1027736 AB3456_RS13585 WP_017723386.1 2805031..2805546(-) (ssbA) [Staphylococcus pseudoxylosus strain Hao 2022]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAATTGTGTCGTTT
TTAGAAAACAAGCAGATAATGTAAATAACTACTTGTTCAAAGGTAGTTTAGCGGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGACGTCGTGTTTTTGTAACTGAAGTAGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGTCAAGAAAGTAATAATAATTTCCAAAACTTTGGCGGACAACAATCAGGACAAAATACAGCGT
CATATCAAAATAACAATAATAATAACAACAATACATCAAATAATAATCAATCAGATAATCCATTTGCAAATGCAAACGGA
CCTATTGATATTAGTGATGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A418IN43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.372

100

0.637
  ssb Latilactobacillus sakei subsp. sakei 23K

55.429

100

0.567
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

64.327

0.38

Multiple sequence alignment