Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AB3456_RS05050 Genome accession   NZ_CP162632
Coordinates   1084198..1084827 (+) Length   209 a.a.
NCBI ID   WP_017723494.1    Uniprot ID   -
Organism   Staphylococcus pseudoxylosus strain Hao 2022     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079198..1089827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3456_RS05025 (AB3456_05025) - 1080044..1081030 (-) 987 WP_017723489.1 aromatic acid exporter family protein -
  AB3456_RS05030 (AB3456_05030) map 1081207..1081959 (+) 753 WP_017723490.1 type I methionyl aminopeptidase -
  AB3456_RS05035 (AB3456_05035) - 1082064..1082450 (+) 387 WP_017723491.1 hypothetical protein -
  AB3456_RS05040 (AB3456_05040) liaF 1082467..1083168 (+) 702 WP_368679796.1 cell wall-active antibiotics response protein LiaF -
  AB3456_RS05045 (AB3456_05045) vraS 1083165..1084208 (+) 1044 WP_017723493.1 sensor histidine kinase Regulator
  AB3456_RS05050 (AB3456_05050) vraR 1084198..1084827 (+) 630 WP_017723494.1 response regulator transcription factor Regulator
  AB3456_RS05055 (AB3456_05055) - 1085097..1086242 (-) 1146 WP_017723495.1 YihY/virulence factor BrkB family protein -
  AB3456_RS05060 (AB3456_05060) - 1086598..1086882 (-) 285 WP_017723496.1 hypothetical protein -
  AB3456_RS05065 (AB3456_05065) - 1086889..1087353 (-) 465 WP_017723497.1 low molecular weight protein-tyrosine-phosphatase -
  AB3456_RS05070 (AB3456_05070) - 1087488..1087691 (+) 204 WP_017723498.1 DUF1128 family protein -
  AB3456_RS05075 (AB3456_05075) - 1087709..1088947 (+) 1239 WP_107551833.1 aminopeptidase -
  AB3456_RS05080 (AB3456_05080) - 1089040..1089561 (+) 522 WP_017723500.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23734.27 Da        Isoelectric Point: 4.7778

>NTDB_id=1027713 AB3456_RS05050 WP_017723494.1 1084198..1084827(+) (vraR) [Staphylococcus pseudoxylosus strain Hao 2022]
MPIKVLFVDDHEMVRIGISSYLSTQPDIDVVGEGKSGKEAIEKAHQLNPDLILMDLLMDDMDGVEATEQVKKDLPHMKVV
MLTSYIEDNEVYRALDSGVDSYILKTTSASDIAEAIRKTYNNESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1027713 AB3456_RS05050 WP_017723494.1 1084198..1084827(+) (vraR) [Staphylococcus pseudoxylosus strain Hao 2022]
ATGCCGATTAAAGTTTTATTTGTGGATGACCATGAAATGGTCCGAATTGGAATATCTAGCTATTTATCAACACAACCAGA
TATTGATGTTGTAGGAGAAGGGAAATCCGGAAAGGAAGCAATTGAAAAGGCACACCAATTGAATCCAGATTTAATATTAA
TGGATTTACTAATGGATGATATGGACGGTGTTGAAGCAACTGAACAAGTTAAAAAAGATTTACCTCATATGAAGGTAGTC
ATGCTTACGAGTTATATAGAAGATAACGAAGTATACCGTGCGCTTGATTCTGGTGTAGATAGTTACATTTTAAAAACAAC
GAGCGCTAGTGATATTGCAGAAGCAATAAGAAAAACCTATAATAATGAATCGGTTTTTGAAGCAGAAGTTTTAGTTAAGA
TGAGAAATAGGATGAAACAACGTGCAGAATTATATGAAATGTTAACAGAGCGTGAGATGGAAATCTTATTATTAATTGCA
AAAGGCTACTCAAACCAAGAAATAGCAAGCGCCTCACATATTACAATTAAAACCGTTAAAACACATGTAAGTAATATTTT
GAGTAAATTAGAAGTACAAGATAGAACACAAGCTGTTATTTACGCTTTTCAACACAACTTAATTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

88.517

100

0.885
  degU Bacillus subtilis subsp. subtilis str. 168

34.375

100

0.368

Multiple sequence alignment