Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB3Z07_RS20985 Genome accession   NZ_CP162630
Coordinates   4246334..4246975 (-) Length   213 a.a.
NCBI ID   WP_251681754.1    Uniprot ID   -
Organism   Metabacillus halosaccharovorans strain Hao 2024     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 4241334..4251975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Z07_RS20950 (AB3Z07_20950) - 4242245..4242667 (+) 423 WP_078433420.1 Na(+)/H(+) antiporter subunit B -
  AB3Z07_RS20955 (AB3Z07_20955) - 4242667..4243008 (+) 342 WP_078431259.1 Na(+)/H(+) antiporter subunit C -
  AB3Z07_RS20960 (AB3Z07_20960) - 4243001..4244479 (+) 1479 WP_368657598.1 Na+/H+ antiporter subunit D -
  AB3Z07_RS20965 (AB3Z07_20965) - 4244485..4244961 (+) 477 WP_026558992.1 Na+/H+ antiporter subunit E -
  AB3Z07_RS20970 (AB3Z07_20970) - 4244963..4245247 (+) 285 WP_026558993.1 Na(+)/H(+) antiporter subunit F1 -
  AB3Z07_RS20975 (AB3Z07_20975) mnhG 4245231..4245587 (+) 357 WP_216776455.1 monovalent cation/H(+) antiporter subunit G -
  AB3Z07_RS20980 (AB3Z07_20980) - 4245634..4246014 (-) 381 WP_251681947.1 hotdog fold thioesterase -
  AB3Z07_RS20985 (AB3Z07_20985) comA 4246334..4246975 (-) 642 WP_251681754.1 response regulator transcription factor Regulator
  AB3Z07_RS20990 (AB3Z07_20990) comP 4247102..4249396 (-) 2295 WP_368657599.1 histidine kinase Regulator
  AB3Z07_RS20995 (AB3Z07_20995) comX 4249416..4249574 (-) 159 WP_368657600.1 competence pheromone ComX -
  AB3Z07_RS21000 (AB3Z07_21000) - 4249577..4250473 (-) 897 WP_368657601.1 polyprenyl synthetase family protein -
  AB3Z07_RS21005 (AB3Z07_21005) - 4250650..4250790 (-) 141 WP_026558999.1 DegQ family regulator -
  AB3Z07_RS21010 (AB3Z07_21010) - 4251108..4251332 (-) 225 WP_368657602.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5350

>NTDB_id=1027688 AB3Z07_RS20985 WP_251681754.1 4246334..4246975(-) (comA) [Metabacillus halosaccharovorans strain Hao 2024]
MIHILVVDDHPAVREGTKAILEAEEGVKVDCLNPPYTEEAFEKLDFSPFDVILMDLNLGEVNGMELSKTILEMKQTCKVI
LYTGYDVDDYFEEALRLGIHGAISKTESKQKLLTYIRLAIEGDIVVPYQFFQKLLSQNQVHAEHSETIEEVFNEREKAIL
QEVEKGLTNQEIADHLHLSKRSIEYSLTSIFNKLNVSSRTEAVLIAKSNGVID

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1027688 AB3Z07_RS20985 WP_251681754.1 4246334..4246975(-) (comA) [Metabacillus halosaccharovorans strain Hao 2024]
ATGATACACATATTAGTTGTGGATGATCATCCAGCGGTTAGAGAAGGCACGAAAGCAATCTTGGAAGCTGAGGAAGGTGT
AAAAGTGGATTGTTTAAATCCGCCTTACACTGAGGAAGCTTTCGAAAAGCTGGATTTTTCACCGTTTGATGTTATTTTAA
TGGATTTGAACTTAGGTGAAGTTAATGGAATGGAGCTTTCTAAAACGATATTAGAAATGAAACAAACGTGTAAAGTTATT
CTTTACACGGGTTATGATGTTGATGATTATTTTGAAGAGGCACTTCGACTTGGTATACATGGTGCAATTAGTAAAACAGA
ATCCAAGCAGAAGCTACTTACATATATTCGACTTGCAATAGAGGGAGATATTGTTGTACCCTATCAATTCTTTCAAAAGC
TGCTGTCACAAAATCAGGTTCATGCAGAGCACTCTGAAACGATAGAAGAAGTGTTTAATGAGCGGGAGAAAGCCATTCTG
CAAGAAGTAGAAAAAGGACTTACAAATCAAGAAATTGCTGATCACCTTCATTTAAGTAAAAGATCAATAGAATACAGTTT
AACATCTATTTTCAACAAATTGAATGTTAGTAGTCGGACAGAAGCGGTATTGATCGCGAAATCCAATGGGGTAATCGATT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

63.084

100

0.634

Multiple sequence alignment