Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AB4027_RS00045 | Genome accession | NZ_CP162615 |
| Coordinates | 10641..11168 (+) | Length | 175 a.a. |
| NCBI ID | WP_091487069.1 | Uniprot ID | A0A1H7RSC0 |
| Organism | Alkalibacterium putridalgicola strain BIM B-1968 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5641..16168
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB4027_RS00035 (AB4027_00035) | gyrA | 7543..10086 (+) | 2544 | WP_368646433.1 | DNA gyrase subunit A | - |
| AB4027_RS00040 (AB4027_00040) | rpsF | 10286..10585 (+) | 300 | WP_091487067.1 | 30S ribosomal protein S6 | - |
| AB4027_RS00045 (AB4027_00045) | ssb | 10641..11168 (+) | 528 | WP_091487069.1 | single-stranded DNA-binding protein | Machinery gene |
| AB4027_RS00050 (AB4027_00050) | rpsR | 11195..11428 (+) | 234 | WP_091487071.1 | 30S ribosomal protein S18 | - |
| AB4027_RS00055 (AB4027_00055) | ltrA | 11865..13253 (+) | 1389 | WP_368645238.1 | group II intron reverse transcriptase/maturase | - |
| AB4027_RS00060 (AB4027_00060) | - | 13443..15440 (+) | 1998 | WP_368645505.1 | DHH family phosphoesterase | - |
| AB4027_RS00065 (AB4027_00065) | rplI | 15463..15915 (+) | 453 | WP_091487072.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19574.20 Da Isoelectric Point: 4.8158
>NTDB_id=1027550 AB4027_RS00045 WP_091487069.1 10641..11168(+) (ssb) [Alkalibacterium putridalgicola strain BIM B-1968]
MINNVVLVGRLTRDAELRYTGSGTAVASFTVAVERQFKNAQGERETDFINCVAWRKTAEIISNFTRKGSLVGVTGHIQTR
NYTNNEGRKVYITEVVCENFQMLEPKSVTEKRAQNDGSSSNSGFSNNNYSNNSNYSQNNNQAPKNNSKSNYANFDEDPFD
SNNDSIDISDDDLPF
MINNVVLVGRLTRDAELRYTGSGTAVASFTVAVERQFKNAQGERETDFINCVAWRKTAEIISNFTRKGSLVGVTGHIQTR
NYTNNEGRKVYITEVVCENFQMLEPKSVTEKRAQNDGSSSNSGFSNNNYSNNSNYSQNNNQAPKNNSKSNYANFDEDPFD
SNNDSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=1027550 AB4027_RS00045 WP_091487069.1 10641..11168(+) (ssb) [Alkalibacterium putridalgicola strain BIM B-1968]
TTGATTAACAATGTCGTACTAGTTGGAAGATTGACTAGAGATGCTGAACTTCGTTATACGGGTAGCGGGACAGCCGTTGC
TTCATTTACCGTAGCTGTGGAACGTCAATTCAAGAACGCACAAGGTGAGAGAGAAACTGACTTTATCAACTGTGTGGCTT
GGAGAAAAACAGCTGAGATCATTTCTAACTTTACCCGCAAGGGATCGTTAGTCGGAGTGACTGGTCATATTCAAACGCGA
AACTATACCAATAACGAAGGTAGAAAAGTTTATATTACAGAAGTAGTCTGTGAAAACTTCCAGATGCTTGAACCGAAGTC
GGTCACTGAAAAACGTGCGCAGAATGATGGGTCAAGTTCTAACTCCGGATTTTCAAATAACAACTACTCCAATAATTCAA
ATTATTCGCAGAATAACAATCAAGCTCCCAAAAACAACAGTAAAAGCAATTACGCAAATTTCGATGAGGATCCATTTGAT
TCAAACAATGATTCGATCGATATTTCCGATGACGATTTACCATTTTGA
TTGATTAACAATGTCGTACTAGTTGGAAGATTGACTAGAGATGCTGAACTTCGTTATACGGGTAGCGGGACAGCCGTTGC
TTCATTTACCGTAGCTGTGGAACGTCAATTCAAGAACGCACAAGGTGAGAGAGAAACTGACTTTATCAACTGTGTGGCTT
GGAGAAAAACAGCTGAGATCATTTCTAACTTTACCCGCAAGGGATCGTTAGTCGGAGTGACTGGTCATATTCAAACGCGA
AACTATACCAATAACGAAGGTAGAAAAGTTTATATTACAGAAGTAGTCTGTGAAAACTTCCAGATGCTTGAACCGAAGTC
GGTCACTGAAAAACGTGCGCAGAATGATGGGTCAAGTTCTAACTCCGGATTTTCAAATAACAACTACTCCAATAATTCAA
ATTATTCGCAGAATAACAATCAAGCTCCCAAAAACAACAGTAAAAGCAATTACGCAAATTTCGATGAGGATCCATTTGAT
TCAAACAATGATTCGATCGATATTTCCGATGACGATTTACCATTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.062 |
100 |
0.577 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.568 |
100 |
0.509 |