Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   BJR96_RS07045 Genome accession   NZ_LT545678
Coordinates   1384739..1385437 (+) Length   232 a.a.
NCBI ID   WP_069986650.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate SA111     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1379739..1390437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJR96_RS07030 (SA111_01410) - 1379865..1382468 (-) 2604 WP_231909355.1 type 2 lanthipeptide synthetase LanM family protein -
  BJR96_RS07035 (SA111_01411) - 1382583..1383527 (+) 945 WP_000222594.1 IS30 family transposase -
  BJR96_RS11590 (SA111_01413) - 1383722..1383883 (-) 162 WP_000794683.1 lacticin 481 family lantibiotic -
  BJR96_RS07040 (SA111_01414) - 1384349..1384504 (-) 156 WP_000410306.1 lacticin 481 family lantibiotic -
  BJR96_RS07045 (SA111_01415) scnR 1384739..1385437 (+) 699 WP_069986650.1 response regulator transcription factor Regulator
  BJR96_RS07050 (SA111_01416) - 1385454..1386814 (+) 1361 Protein_1331 sensor histidine kinase -
  BJR96_RS07055 (SA111_01418) - 1386894..1388759 (-) 1866 WP_000261810.1 SAG1250 family conjugative relaxase -
  BJR96_RS07060 (SA111_01419) - 1388746..1389111 (-) 366 WP_000263044.1 MobC family plasmid mobilization relaxosome protein -
  BJR96_RS07065 (SA111_01420) - 1389121..1389480 (-) 360 WP_000529540.1 SAG1252 family conjugative relaxosome accessory protein -
  BJR96_RS07070 (SA111_01421) - 1389819..1390115 (+) 297 WP_070005704.1 hypothetical protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26039.07 Da        Isoelectric Point: 7.1342

>NTDB_id=1027508 BJR96_RS07045 WP_069986650.1 1384739..1385437(+) (scnR) [Streptococcus agalactiae isolate SA111]
MNFETQLLNKRILIIDDDVSLSQSIKEVLVNRGFKNISNAYSISEGIDIFSVSKIDFIILDVMLPDGEGYLLAKYVRKTS
DIPILFLTAKNNPDDEVKGLGSGGDDFVTKPFLPKTLIYRIIALLRRAYKNESELITMSSCTIDLNNASVNKNGNQLSLT
PTEIQILRKLYSNKNYIVSTETICDTIWGLDSSGYEKSLMVHIRNIREKIESSPSKPDHLITVKGLGYKLVV

Nucleotide


Download         Length: 699 bp        

>NTDB_id=1027508 BJR96_RS07045 WP_069986650.1 1384739..1385437(+) (scnR) [Streptococcus agalactiae isolate SA111]
ATGAATTTTGAAACACAGTTATTAAACAAACGGATATTAATAATAGATGATGATGTCTCACTTAGTCAATCTATTAAAGA
GGTATTAGTCAATAGAGGATTTAAAAATATTAGTAACGCTTATAGTATTAGCGAGGGCATTGATATTTTTTCTGTATCCA
AGATTGATTTCATCATATTAGATGTAATGTTACCTGATGGTGAGGGGTATTTACTTGCCAAATATGTTAGAAAAACTTCT
GATATTCCAATATTATTTTTAACAGCAAAAAATAATCCTGATGATGAAGTTAAAGGCCTTGGATCAGGTGGTGATGATTT
TGTCACTAAACCATTTCTCCCGAAAACCTTAATATATCGTATCATTGCTCTATTAAGAAGAGCATACAAAAATGAATCCG
AATTAATTACAATGTCTTCTTGTACCATTGATTTAAATAATGCAAGTGTAAATAAAAATGGAAATCAACTTTCACTAACT
CCTACTGAAATACAGATACTACGAAAACTATACAGTAATAAGAACTACATTGTTTCAACAGAAACAATTTGTGATACTAT
TTGGGGACTTGATAGTTCTGGATATGAAAAGTCATTAATGGTACACATTCGAAATATAAGAGAAAAAATAGAATCAAGCC
CTTCTAAACCAGATCATCTTATTACCGTTAAAGGTCTTGGATATAAGCTTGTTGTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-121)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

40.948

100

0.409
  vicR Streptococcus mutans UA159

37.118

98.707

0.366
  micA Streptococcus pneumoniae Cp1015

36.842

98.276

0.362