Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AB4Y39_RS03250 Genome accession   NZ_CP162607
Coordinates   619603..621825 (+) Length   740 a.a.
NCBI ID   WP_280040654.1    Uniprot ID   -
Organism   Pseudomonas sp. Hg7Tf     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 614603..626825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4Y39_RS03230 (AB4Y39_03230) - 616480..617103 (+) 624 WP_045187123.1 glutathione S-transferase family protein -
  AB4Y39_RS03235 (AB4Y39_03235) - 617242..618174 (+) 933 WP_045187126.1 ABC transporter ATP-binding protein -
  AB4Y39_RS03240 (AB4Y39_03240) - 618171..618950 (+) 780 WP_045187128.1 ABC transporter permease -
  AB4Y39_RS03245 (AB4Y39_03245) - 618918..619460 (-) 543 WP_045187130.1 DUF2062 domain-containing protein -
  AB4Y39_RS03250 (AB4Y39_03250) comA 619603..621825 (+) 2223 WP_280040654.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB4Y39_RS03255 (AB4Y39_03255) exbB 621896..622531 (+) 636 WP_045187134.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB4Y39_RS03260 (AB4Y39_03260) - 622528..622959 (+) 432 WP_045187136.1 biopolymer transporter ExbD -
  AB4Y39_RS03265 (AB4Y39_03265) lpxK 622959..623969 (+) 1011 WP_045187139.1 tetraacyldisaccharide 4'-kinase -
  AB4Y39_RS03270 (AB4Y39_03270) - 624008..624193 (+) 186 WP_045187141.1 Trm112 family protein -
  AB4Y39_RS03275 (AB4Y39_03275) kdsB 624190..624954 (+) 765 WP_045187143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB4Y39_RS03280 (AB4Y39_03280) - 624954..625418 (+) 465 WP_045187146.1 low molecular weight protein-tyrosine-phosphatase -
  AB4Y39_RS03285 (AB4Y39_03285) murB 625415..626434 (+) 1020 WP_045187148.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80308.34 Da        Isoelectric Point: 10.2841

>NTDB_id=1027439 AB4Y39_RS03250 WP_280040654.1 619603..621825(+) (comA) [Pseudomonas sp. Hg7Tf]
MRTGMLALALGLLCLSVLPVLPSVGILAVLTIIGLFCLPFRMRPLGLFLLGVCWACLSAQQALDDRLVPTLDGRTLWLEG
RVVGLPQQSERSVRFDVEGAQSRRGQLPQRLQLSWFGGPAVNSGERWRLAVTLKRPHGLLNPHGVDREATLLARRIGATG
TVKAGERLTSAEGAWRDSVRQRVLSVDAQGREAELVALVLGDGAGLARESWQALQATGTVHLLVISGQHIGLFAGLIYGL
IAGLARLGWWPQALPWLPWACGLAFAAALSYGLLAGLQVPVQRACVMLAVVLLWRLRFRHLGVGLPLLLALNAVLLWEPL
ASLLPGFWLSFGAVAVLVFTFSGRLGSWRPWQAWGRAQWMIALGLLPILMALGLPVSLSAPLANLFAVPWISLAVLPLAL
LGTLLLPVPFVGQGLLWLAGGLLDGLFRLLGHLAQLQPAWIPQPLPWPLWLLLALGTVLVLLPPGLPMRVLGWPLLLLAV
FAPRERIPHGQLEVWQLDVGQGLAFVLRTREHVLLYDAGPAMGDHDLGERVVLPTLHKLGVKAVDLMMLSHADADHAGGA
SALQRGLPVRQILSGEAAKLPPALQAQACVNGQRWQWDGVNFSVWHWQGARDSNQGSCVVLIEAGGERLLLTGDLDVAGE
RAWVRDWQATGIDWLQAPHHGSRTSSSQALLTATTPRGVLISRGRYNAFGHPHAEVMERYSINGIEAYDSAVHGALRLRL
GAFGEPLALRNQRRFWRDPG

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=1027439 AB4Y39_RS03250 WP_280040654.1 619603..621825(+) (comA) [Pseudomonas sp. Hg7Tf]
ATGCGCACAGGGATGTTGGCGCTGGCACTTGGCCTGTTGTGTCTGAGTGTACTACCGGTTTTGCCATCGGTCGGGATACT
GGCCGTGTTGACCATTATCGGACTTTTCTGCCTGCCTTTTCGGATGCGTCCACTCGGTCTGTTTCTGCTGGGTGTGTGTT
GGGCCTGCCTGTCGGCGCAGCAGGCGCTGGATGATCGCTTGGTGCCAACGTTGGATGGGCGCACCCTATGGTTGGAGGGT
AGGGTGGTCGGCTTGCCTCAGCAAAGCGAGCGATCAGTACGCTTCGACGTTGAGGGCGCCCAGTCGCGACGTGGACAGCT
GCCACAGCGCCTGCAGCTGAGTTGGTTTGGCGGGCCTGCGGTCAATAGTGGCGAGCGCTGGCGGCTGGCAGTCACCCTCA
AGCGTCCCCATGGTTTGCTCAACCCGCACGGTGTCGATCGTGAGGCTACCTTACTGGCCCGGCGTATCGGCGCTACCGGT
ACCGTCAAGGCCGGGGAGCGCCTGACGTCTGCAGAAGGCGCTTGGCGTGATAGCGTGCGCCAGCGCGTGTTGAGTGTGGA
TGCGCAGGGGCGCGAGGCGGAACTGGTGGCGCTGGTATTGGGCGATGGCGCAGGCTTGGCGCGGGAGAGCTGGCAAGCGC
TACAGGCCACCGGCACCGTGCACTTGCTAGTGATCTCCGGGCAGCACATCGGCTTGTTCGCCGGTCTGATCTATGGGTTG
ATTGCTGGCCTGGCTAGGTTGGGCTGGTGGCCGCAAGCCTTGCCCTGGCTGCCTTGGGCCTGTGGGCTGGCCTTTGCCGC
CGCGTTGAGCTACGGCCTGCTGGCCGGTTTGCAGGTGCCGGTGCAGCGAGCCTGTGTGATGTTGGCCGTGGTGTTGCTCT
GGCGTTTGCGTTTTCGCCATCTAGGCGTGGGATTGCCGCTACTGCTGGCGCTCAATGCGGTGTTGCTGTGGGAGCCGCTG
GCGAGTCTTTTGCCGGGTTTCTGGTTGTCTTTCGGCGCCGTTGCGGTACTGGTGTTCACCTTTAGTGGTCGGCTGGGCAG
TTGGCGCCCTTGGCAGGCGTGGGGCCGGGCGCAGTGGATGATTGCCTTGGGCTTGCTACCGATATTGATGGCGCTGGGGC
TGCCGGTCAGCCTCAGTGCGCCGCTGGCCAATCTGTTCGCCGTGCCCTGGATCAGCCTGGCAGTGTTGCCGTTGGCGTTA
CTGGGAACCTTGCTGTTGCCCGTGCCGTTTGTTGGGCAGGGTTTACTCTGGTTGGCTGGCGGTTTGCTTGATGGTCTGTT
CCGCCTGCTGGGGCACCTTGCTCAGTTGCAGCCCGCATGGATACCGCAGCCGTTGCCGTGGCCGCTGTGGTTATTGCTGG
CCCTGGGCACGGTGCTGGTGTTGCTGCCCCCTGGCTTGCCAATGCGTGTTCTGGGCTGGCCCTTGCTGTTGCTGGCGGTA
TTTGCACCGCGAGAGCGCATACCGCATGGTCAGCTGGAGGTCTGGCAACTGGACGTTGGTCAGGGCCTGGCGTTCGTGCT
GCGTACCCGTGAGCACGTGCTGCTGTACGACGCCGGGCCGGCAATGGGTGATCACGATTTGGGTGAACGCGTGGTATTGC
CGACGCTGCATAAGCTGGGGGTGAAGGCGGTTGACCTGATGATGCTCAGCCACGCTGACGCTGACCATGCCGGTGGCGCA
TCAGCGCTCCAACGCGGCTTGCCGGTGCGGCAAATACTCAGCGGTGAAGCTGCCAAGCTGCCGCCCGCTTTGCAGGCCCA
AGCCTGTGTCAACGGCCAGCGCTGGCAGTGGGATGGGGTCAATTTCTCTGTCTGGCACTGGCAAGGCGCACGCGACAGCA
ATCAGGGTTCGTGCGTCGTGCTGATCGAGGCGGGCGGTGAGCGTCTGCTGCTCACCGGCGATCTCGATGTCGCGGGCGAG
CGGGCCTGGGTCCGTGACTGGCAGGCCACCGGCATCGACTGGCTGCAAGCGCCGCATCACGGCAGTCGCACATCCTCCAG
TCAGGCGTTGCTGACGGCCACGACGCCGCGTGGCGTGTTGATTTCCAGGGGGCGCTATAACGCCTTTGGCCATCCCCATG
CCGAGGTCATGGAACGCTACTCGATAAATGGCATCGAAGCGTACGACAGCGCTGTGCATGGTGCGCTACGCCTGCGTCTG
GGGGCTTTTGGCGAGCCGTTGGCGTTACGCAACCAACGCCGGTTCTGGCGCGACCCGGGTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.501

97.162

0.588
  comA Ralstonia pseudosolanacearum GMI1000

34.286

100

0.373

Multiple sequence alignment