Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AB4Y39_RS03255 Genome accession   NZ_CP162607
Coordinates   621896..622531 (+) Length   211 a.a.
NCBI ID   WP_045187134.1    Uniprot ID   A0AB39JSN1
Organism   Pseudomonas sp. Hg7Tf     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 616896..627531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4Y39_RS03235 (AB4Y39_03235) - 617242..618174 (+) 933 WP_045187126.1 ABC transporter ATP-binding protein -
  AB4Y39_RS03240 (AB4Y39_03240) - 618171..618950 (+) 780 WP_045187128.1 ABC transporter permease -
  AB4Y39_RS03245 (AB4Y39_03245) - 618918..619460 (-) 543 WP_045187130.1 DUF2062 domain-containing protein -
  AB4Y39_RS03250 (AB4Y39_03250) comA 619603..621825 (+) 2223 WP_280040654.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB4Y39_RS03255 (AB4Y39_03255) exbB 621896..622531 (+) 636 WP_045187134.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB4Y39_RS03260 (AB4Y39_03260) - 622528..622959 (+) 432 WP_045187136.1 biopolymer transporter ExbD -
  AB4Y39_RS03265 (AB4Y39_03265) lpxK 622959..623969 (+) 1011 WP_045187139.1 tetraacyldisaccharide 4'-kinase -
  AB4Y39_RS03270 (AB4Y39_03270) - 624008..624193 (+) 186 WP_045187141.1 Trm112 family protein -
  AB4Y39_RS03275 (AB4Y39_03275) kdsB 624190..624954 (+) 765 WP_045187143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB4Y39_RS03280 (AB4Y39_03280) - 624954..625418 (+) 465 WP_045187146.1 low molecular weight protein-tyrosine-phosphatase -
  AB4Y39_RS03285 (AB4Y39_03285) murB 625415..626434 (+) 1020 WP_045187148.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22832.02 Da        Isoelectric Point: 6.8759

>NTDB_id=1027440 AB4Y39_RS03255 WP_045187134.1 621896..622531(+) (exbB) [Pseudomonas sp. Hg7Tf]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTANASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1027440 AB4Y39_RS03255 WP_045187134.1 621896..622531(+) (exbB) [Pseudomonas sp. Hg7Tf]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTTGC
CGAGCGCCTCTGGACCTTGCGCGCCAGCCGGGTCACGCCGCCGCACCTGCTCGGTCAAGTGTGGATGTGGATCAAAGACA
AACAGCTGACCAGCGACAAGCTCAAGGCCCTGCGCGCGGACTCACCCTTGGGCGAGATCCTCGCCGCAGGTCTGGCCAAC
TCCCGCCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCCGCCGCTCGGGTCATCCACGAGCTGGAGCGTTACAT
CAATGCCCTGGGCACCATCGCCGCCATGGCGCCGCTACTCGGTCTACTTGGTACCGTACTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCAGCGGCATGACCGCCAACGCCTCGGTACTGGCCGGTGGTATCTCCAAGGCGCTGATCACTACGGCG
GCGGGTCTGATGGTGGGTATTCCTGCGGTGTTTTTCCACCGTTTCCTGCAGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAACAAGAAGCTATCAAGCTGGTTGAAGTGGTGCAGGGTGACCGTGATGTCGACCTGGCTGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863

Multiple sequence alignment