Detailed information NTG1027413

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: AB0763_RS13080
• Genome accession: NZ_CP162601
• Coordinates: 2966000..2967106 (-)
• Length: 368 a.a.
• NCBI ID: WP_306102242.1
• Uniprot ID: A0AB39HC77
• Organism: Vibrio sp. HB236076
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 2961000..2972106

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0763_RS13050 (AB0763_13050)	aroE	2961150..2961974 (-)	825	WP_306102237.1	shikimate dehydrogenase	-
AB0763_RS13055 (AB0763_13055)	hemF	2962030..2962947 (-)	918	WP_306102299.1	oxygen-dependent coproporphyrinogen oxidase	-
AB0763_RS13060 (AB0763_13060)	purE	2963212..2963697 (+)	486	WP_306102238.1	5-(carboxyamino)imidazole ribonucleotide mutase	-
AB0763_RS13065 (AB0763_13065)	-	2963706..2964845 (+)	1140	WP_306102239.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
AB0763_RS13070 (AB0763_13070)	-	2964947..2965510 (-)	564	WP_306102240.1	type I DNA topoisomerase	-
AB0763_RS13075 (AB0763_13075)	-	2965515..2965997 (-)	483	WP_306102241.1	DUF494 family protein	-
AB0763_RS13080 (AB0763_13080)	dprA	2966000..2967106 (-)	1107	WP_306102242.1	DNA-processing protein DprA	Machinery gene
AB0763_RS13085 (AB0763_13085)	def	2967381..2967908 (+)	528	WP_306102243.1	peptide deformylase	-
AB0763_RS13090 (AB0763_13090)	fmt	2967931..2968878 (+)	948	WP_306102244.1	methionyl-tRNA formyltransferase	-
AB0763_RS13095 (AB0763_13095)	rsmB	2968958..2970241 (+)	1284	WP_306102245.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
AB0763_RS13100 (AB0763_13100)	trkA	2970287..2971663 (+)	1377	WP_306102246.1	Trk system potassium transporter TrkA	-

Sequence

Protein

• Length: 368 a.a.
• Molecular weight: 40242.32 Da
• Isoelectric Point: 7.3268

>NTDB_id=1027413 AB0763_RS13080 WP_306102242.1 2966000..2967106(-) (dprA) [Vibrio sp. HB236076]
MRKELSPELVWLALSLLPKIGPQRLSSLWPTIPVQGCHLAVRADWLSWGISDAQYTRLDRVWQQAIRVEQWLADKPNRSM
LTPWSLGYPRLLNEINSKPSVLFVEGDGSVLQQAQVAIVGGRHARPQALTLAQQWSRELAGQGLVITSGLAVGIDGFAHD
GALKGGGKTIAVLGSGIDRIYPACHRGLAERIVESGALVSEFLPDSRPQAAYFPRRNRIISGLSLGAVIVEAAEKSGSLI
TARYALEQNREVMATPSFPGERVGAGCNRLIKQGAALVQCAQDILDEISPMLMWAPDIVEEQKKSPDDNQSLPFSSLLDN
VKEEPLPIDIIASRSHIPVQQVMSQLLELELLGFVESVTGGYIRKRRG

Nucleotide

• Length: 1107 bp

>NTDB_id=1027413 AB0763_RS13080 WP_306102242.1 2966000..2967106(-) (dprA) [Vibrio sp. HB236076]
ATGCGAAAGGAATTGTCACCGGAGCTCGTGTGGTTGGCCCTGAGTCTATTGCCCAAAATCGGGCCACAGCGTTTGTCCTC
CTTGTGGCCCACGATACCTGTTCAAGGGTGCCATTTAGCGGTTCGCGCCGATTGGCTGTCTTGGGGAATAAGCGACGCGC
AATATACGCGCCTCGATCGGGTATGGCAGCAAGCGATTCGCGTTGAGCAATGGCTGGCAGACAAACCCAATCGCAGTATG
TTGACCCCTTGGAGTTTGGGGTACCCGCGTTTACTCAATGAGATTAACAGTAAACCCAGTGTGCTGTTTGTCGAAGGGGA
TGGGTCGGTGTTGCAACAGGCTCAAGTGGCGATAGTGGGTGGACGTCACGCTCGGCCTCAAGCCCTGACGCTTGCGCAGC
AGTGGAGTCGGGAATTGGCAGGACAAGGCTTGGTGATCACCAGTGGTCTCGCGGTGGGGATTGATGGTTTTGCCCACGAC
GGTGCACTAAAAGGCGGAGGAAAAACCATCGCCGTGCTTGGTTCTGGTATCGATCGTATTTACCCCGCTTGTCACCGTGG
TTTGGCTGAGCGCATTGTTGAATCTGGGGCGCTGGTTAGCGAATTTTTACCGGATAGTCGCCCACAAGCGGCCTATTTCC
CTCGCCGCAATCGCATCATCAGCGGCTTGTCTTTGGGGGCGGTTATCGTGGAAGCGGCAGAAAAAAGTGGCTCTTTAATT
ACCGCTCGTTACGCGCTAGAGCAAAATCGCGAGGTGATGGCGACGCCGAGCTTCCCCGGAGAACGGGTGGGGGCTGGGTG
TAATCGTTTAATTAAGCAAGGTGCGGCCTTAGTGCAATGTGCGCAGGATATACTTGATGAAATTTCGCCAATGTTGATGT
GGGCCCCTGACATTGTCGAAGAACAAAAAAAGTCGCCAGACGACAATCAGTCATTGCCATTTTCCTCTCTGTTGGATAAC
GTAAAAGAAGAACCCCTACCCATTGATATTATCGCAAGCAGGAGCCATATACCTGTTCAACAAGTTATGTCACAGTTACT
CGAGTTAGAACTATTAGGGTTCGTTGAGTCGGTCACTGGTGGCTACATTCGAAAGAGGAGAGGCTAG

Domains

Predicted by InterproScan.

• DprA winged helix domain (DprA_WH) (307-361)

• DNA recombination-mediator protein A (DNA_processg_A) (76-279)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Vibrio cholerae strain A1552	52.198	98.913	0.516
dprA	Vibrio campbellii strain DS40M4	49.861	97.554	0.486
dprA	Legionella pneumophila strain ERS1305867	43.443	99.457	0.432
dprA	Glaesserella parasuis strain SC1401	42.162	100	0.424