Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AB0763_RS01095 Genome accession   NZ_CP162601
Coordinates   235557..236189 (-) Length   210 a.a.
NCBI ID   WP_306101938.1    Uniprot ID   A0AB39HBF0
Organism   Vibrio sp. HB236076     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 230557..241189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0763_RS01070 (AB0763_01070) - 230592..231260 (+) 669 WP_306101933.1 phosphoglycolate phosphatase -
  AB0763_RS01075 (AB0763_01075) trpS 231433..232449 (+) 1017 WP_306101934.1 tryptophan--tRNA ligase -
  AB0763_RS01080 (AB0763_01080) - 232542..233135 (+) 594 WP_306101935.1 aminodeoxychorismate/anthranilate synthase component II -
  AB0763_RS01085 (AB0763_01085) - 233360..234571 (+) 1212 WP_306101936.1 aspartate aminotransferase family protein -
  AB0763_RS01090 (AB0763_01090) - 234871..235455 (+) 585 WP_306101937.1 hypothetical protein -
  AB0763_RS01095 (AB0763_01095) crp 235557..236189 (-) 633 WP_306101938.1 cAMP-activated global transcriptional regulator CRP Regulator
  AB0763_RS01100 (AB0763_01100) - 236427..237296 (-) 870 WP_306101939.1 phosphoribulokinase -
  AB0763_RS01105 (AB0763_01105) - 237482..237718 (-) 237 WP_306101940.1 YheU family protein -
  AB0763_RS01110 (AB0763_01110) - 237897..238871 (-) 975 WP_306101941.1 hydrolase -
  AB0763_RS01115 (AB0763_01115) - 239064..239543 (-) 480 WP_306101942.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23538.36 Da        Isoelectric Point: 8.2760

>NTDB_id=1027392 AB0763_RS01095 WP_306101938.1 235557..236189(-) (crp) [Vibrio sp. HB236076]
MVLSKPNTDPTLDWFLSHCHIHKYPSKSTLIHAGEKAETLYFIVKGTVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
LERTAWVRAKSACEVAEISYKKFRQLIQVNPEVLMRLASQVSKRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1027392 AB0763_RS01095 WP_306101938.1 235557..236189(-) (crp) [Vibrio sp. HB236076]
ATGGTTCTAAGTAAACCGAATACCGATCCAACATTAGATTGGTTCTTGTCTCACTGTCACATTCATAAATACCCGTCAAA
GAGTACTTTGATTCACGCGGGAGAGAAAGCCGAAACCTTATACTTCATTGTCAAAGGCACCGTTGCCGTTTTGATTAAAG
ATGAAGAAGGCAAAGAAATGATCCTTTCTTACCTCAATCAAGGTGACTTTATTGGCGAGCTAGGCTTATTTGAAGAAGGC
CTTGAGCGTACGGCTTGGGTTCGTGCGAAAAGCGCCTGTGAAGTGGCTGAGATCTCGTACAAAAAATTCCGTCAGCTGAT
TCAAGTCAACCCAGAAGTGTTGATGCGTTTGGCGAGTCAAGTATCAAAACGCCTGCAAGTAACCAGTCAAAAAGTGGGTG
ATCTTGCTTTCCTTGACGTAACCGGTCGCATTGCACAAACGTTACTGAACCTAGCCAAACAGCCCGATGCGATGACGCAC
CCTGATGGCATGCAGATCAAAATTACTCGCCAAGAAATTGGTCAAATCGTTGGCTGTTCTCGCGAGACCGTAGGTCGTAT
TTTGAAAATGCTTGAAGAGCAAAATCTCATCTCTGCGCACGGCAAAACTATTGTCGTTTACGGCACACGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

91.905

100

0.919
  crp Haemophilus influenzae Rd KW20

74.752

96.19

0.719
  crp Acinetobacter baumannii D1279779

48.205

92.857

0.448

Multiple sequence alignment