Detailed information NTG1027334

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: AB4P93_RS12795
• Genome accession: NZ_CP162596
• Coordinates: 2647119..2649359 (-)
• Length: 746 a.a.
• NCBI ID: WP_395593767.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B26140
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2642119..2654359

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4P93_RS12760 (AB4P93_12765)	murB	2642498..2643517 (-)	1020	WP_395593766.1	UDP-N-acetylmuramate dehydrogenase	-
AB4P93_RS12765 (AB4P93_12770)	-	2643514..2643978 (-)	465	WP_210704380.1	low molecular weight protein-tyrosine-phosphatase	-
AB4P93_RS12770 (AB4P93_12775)	kdsB	2643978..2644742 (-)	765	WP_210704379.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AB4P93_RS12775 (AB4P93_12780)	-	2644739..2644924 (-)	186	WP_003174668.1	Trm112 family protein	-
AB4P93_RS12780 (AB4P93_12785)	lpxK	2644947..2645957 (-)	1011	WP_232392439.1	tetraacyldisaccharide 4'-kinase	-
AB4P93_RS12785 (AB4P93_12790)	-	2645957..2646385 (-)	429	WP_210704377.1	biopolymer transporter ExbD	-
AB4P93_RS12790 (AB4P93_12795)	exbB	2646382..2647017 (-)	636	WP_042560451.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
AB4P93_RS12795 (AB4P93_12800)	comA	2647119..2649359 (-)	2241	WP_395593767.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
AB4P93_RS12800 (AB4P93_12805)	-	2649496..2650014 (+)	519	WP_210704375.1	DUF2062 domain-containing protein	-
AB4P93_RS12805 (AB4P93_12810)	-	2650168..2650947 (-)	780	WP_042560454.1	ABC transporter permease	-
AB4P93_RS12810 (AB4P93_12815)	-	2650944..2651876 (-)	933	WP_200616882.1	ABC transporter ATP-binding protein	-
AB4P93_RS12815 (AB4P93_12820)	-	2652013..2652636 (-)	624	WP_210704374.1	glutathione S-transferase family protein	-
AB4P93_RS12820 (AB4P93_12825)	-	2652680..2653339 (-)	660	WP_210704373.1	transglutaminase family protein	-

Sequence

Protein

• Length: 746 a.a.
• Molecular weight: 82052.39 Da
• Isoelectric Point: 10.1736

>NTDB_id=1027334 AB4P93_RS12795 WP_395593767.1 2647119..2649359(-) (comA) [Pseudomonas sp. B26140]
MRTGMMALAVGLLAPIFMPALPPVWLMVLLAVVALMLLPFRSYPLAFLLFGFTWACVSAHWALQDRLPVALDGETRWLEG
RVVGLPQNSDGVVRFELADAHSRHGKLPSLMRLAWYAGPPVNSGERWRLAVKLKRPSGLLNPDAFDYEAWLLAQRIGATG
TVKEGQRLGEARWAWRDNIRQRLLAVDAQGRGGALAALVLGDGSGLSREDWQTLQDTGTVHLLVISGQHIGMLAAVMYLL
VAGLARYGLWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVRRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIGWLFQGLALIAGQWPAWIAPSLPGWALAIGSLGAVLLLLLLPRGVPLRPLGWPLLLI
LVVPPRERLDAGLADVWQLDVGQGLAILIRTRHHALLYDAGPRFRDFDLGERVVLPALRKLNVETLDLMLLSHADADHAG
GALAVARRLQVKQVISGDPPGLPAELNAQACESGRQWQWDGVSFQLWQWADAHDSNQRSCVLQIEANGERLMLTGDIDKH
AERVLLQGPLNVATQWLQAPHHGSRSSSSMALLKALKPDAVLISRGQGNSFGHPHPTVIARYRQQGLRIYDSAEHGAIHL
QLGAFKPPWTMRQYPRFWREPPQSSH

Nucleotide

• Length: 2241 bp

>NTDB_id=1027334 AB4P93_RS12795 WP_395593767.1 2647119..2649359(-) (comA) [Pseudomonas sp. B26140]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTTTGCTTGCTCCGATATTTATGCCGGCCTTACCGCCGGTCTGGTTGAT
GGTGTTGCTGGCGGTCGTGGCTTTGATGTTGCTGCCGTTTCGCAGCTATCCATTGGCTTTTCTGCTTTTTGGTTTCACCT
GGGCTTGCGTCAGCGCGCATTGGGCGTTGCAGGATCGCTTGCCGGTGGCGCTGGATGGCGAAACCCGTTGGCTCGAAGGG
CGCGTGGTCGGGTTGCCGCAAAACAGCGACGGCGTGGTTCGTTTCGAACTGGCGGACGCCCATTCGCGCCACGGCAAACT
GCCGTCACTGATGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAGCGCTGGCGCCTGGCGGTCAAGCTCA
AGCGCCCGAGCGGGTTACTCAATCCGGACGCCTTTGATTACGAAGCCTGGCTACTCGCGCAACGCATTGGCGCAACGGGC
ACGGTCAAGGAGGGTCAGCGCCTTGGCGAGGCGCGATGGGCGTGGCGAGACAACATTCGTCAGCGCTTGCTGGCGGTCGA
CGCGCAGGGCCGGGGAGGGGCGTTGGCGGCGCTGGTGCTGGGCGATGGCTCGGGCCTGAGTCGCGAGGATTGGCAGACTC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATTTCCGGCCAGCACATCGGCATGCTGGCGGCGGTGATGTATTTGCTG
GTCGCCGGGCTGGCCCGATATGGTCTGTGGCCGCTGCGTTGGCCGTGGCTGCCTTGGGCCTGTGGTCTGGCCTTCGCCGC
AGCACTCGGTTACGGCTTGCTCGCCGGATTTGATGTGCCGGTGCGACGGGCCTGCGTGATGGTCGGGCTGGTGCTGCTGT
GGCGCCTGCGCTTTCGTCATCTCGGCGCCTGGTGGCCACTGTTGCTGGCGTTTAATGGCGTGCTGTTGCTGGATCCGCTG
GCCAGTCTGCGCCCCGGCCTCTGGTTGTCATTTGCGGCGGTGGCGGTGCTGATCTTCACCTTTGGCGGGCGTCTTGGGGC
ATGGCGCTGGTGGCAGACATGGACGCGGGCGCAATGGTTGATCGCGATCGGTCTCTGCCCGGTGTTGTTGGCGCTGAATC
TGCCGATCAGCCTCAGTGGGCCGTTGGCGAATTTGCTGGCGGTGCCTTGGGTCAGTCTGGTGGTGCTGCCCCCGGCATTG
CTCGGGACCCTGTTGTTGCCAGTGCCGTATGTCGGCGAAGGGCTGTTGTGGCTGGCGGGTGGTTTGATCGGCTGGCTGTT
CCAGGGCCTGGCGCTGATCGCCGGGCAGTGGCCGGCGTGGATTGCGCCGTCGCTTCCCGGTTGGGCGTTGGCTATCGGCA
GTCTTGGTGCCGTGCTGTTGCTGTTGCTGTTGCCGCGAGGGGTACCGCTGCGTCCGCTGGGCTGGCCATTGTTGTTGATT
CTGGTCGTGCCACCTCGGGAGCGGCTGGACGCCGGACTGGCCGATGTCTGGCAACTCGATGTCGGCCAGGGCCTGGCGAT
TCTGATCCGTACTCGTCATCACGCGCTGCTCTACGATGCCGGGCCGCGGTTCCGCGATTTCGATCTTGGCGAACGTGTTG
TCCTGCCGGCCCTGCGCAAACTGAATGTCGAGACACTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGT
GGTGCTTTGGCCGTTGCGCGCCGTTTGCAGGTGAAGCAAGTCATCAGCGGCGATCCGCCGGGGCTGCCAGCCGAACTGAA
CGCGCAGGCGTGTGAAAGTGGCCGGCAGTGGCAGTGGGACGGTGTCAGTTTTCAACTCTGGCAATGGGCGGACGCTCACG
ACAGCAATCAGCGCTCCTGCGTGTTGCAGATCGAGGCCAATGGTGAGCGCCTGATGCTGACCGGCGATATTGATAAACAC
GCCGAGCGAGTCTTGCTGCAAGGCCCTCTGAACGTAGCCACTCAATGGCTGCAAGCTCCGCACCACGGCAGCCGCAGTTC
ATCATCGATGGCATTGCTCAAAGCGTTGAAACCTGACGCAGTCTTGATATCCCGGGGCCAGGGCAACTCGTTCGGTCATC
CGCATCCGACCGTCATTGCGCGTTATCGCCAGCAAGGGCTGCGTATTTACGACAGTGCCGAGCACGGTGCCATTCATCTG
CAACTGGGCGCGTTCAAACCACCGTGGACAATGCGCCAGTACCCGCGTTTCTGGCGTGAACCGCCGCAGTCCTCCCATTG
A

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-683)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.928	96.247	0.615
comA	Ralstonia pseudosolanacearum GMI1000	33.929	100	0.382