Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AB4P96_RS14010 Genome accession   NZ_CP162589
Coordinates   3058798..3061023 (+) Length   741 a.a.
NCBI ID   WP_395600885.1    Uniprot ID   -
Organism   Pseudomonas sp. B19125     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3053798..3066023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P96_RS13995 (AB4P96_13985) - 3056074..3056799 (+) 726 WP_017136569.1 response regulator transcription factor -
  AB4P96_RS14000 (AB4P96_13990) - 3056786..3058144 (+) 1359 WP_170040237.1 sensor histidine kinase -
  AB4P96_RS14005 (AB4P96_13995) - 3058148..3058663 (-) 516 WP_017136567.1 DUF2062 domain-containing protein -
  AB4P96_RS14010 (AB4P96_14000) comA 3058798..3061023 (+) 2226 WP_395600885.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB4P96_RS14015 (AB4P96_14005) exbB 3061133..3061768 (+) 636 WP_016969293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB4P96_RS14020 (AB4P96_14010) - 3061765..3062193 (+) 429 WP_017136564.1 biopolymer transporter ExbD -
  AB4P96_RS14025 (AB4P96_14015) lpxK 3062193..3063203 (+) 1011 WP_177035002.1 tetraacyldisaccharide 4'-kinase -
  AB4P96_RS14030 (AB4P96_14020) - 3063227..3063412 (+) 186 WP_003174668.1 Trm112 family protein -
  AB4P96_RS14035 (AB4P96_14025) kdsB 3063409..3064173 (+) 765 WP_058419882.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB4P96_RS14040 (AB4P96_14030) - 3064173..3064637 (+) 465 WP_395600886.1 low molecular weight protein-tyrosine-phosphatase -
  AB4P96_RS14045 (AB4P96_14035) murB 3064634..3065653 (+) 1020 WP_395600887.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80054.96 Da        Isoelectric Point: 10.9912

>NTDB_id=1027265 AB4P96_RS14010 WP_395600885.1 3058798..3061023(+) (comA) [Pseudomonas sp. B19125]
MRTGMFAFGMGLLSLRFLPALPATAWLLAMLVVALMLLPFRTYPLAFLLLGVSWACMSAQWALDDRLRPALDGQTRWVEG
RVIGLPQNTSTGVRFELTDSRSRKGRLPKRIRLSWHNGPQVNSGERWRLAVTLKRPAGLLNFQGFDYEAWLLAQRIGATG
SVKDGQRLAPARHAWRDSVRQRLLAVDAQGREAGLAALVLGDGSGLATEDWRVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGLARYGCWPRALPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFNAVLVLEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGAWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLFAVPWISLVVLPLAL
LGTVLLAVPWVGEGLLWLAGGALDGLFTGLALLAGLRAAWVPADVPLGYWLISVTGAVLLLLPKGVPLRLLGWPMLLLAV
FAPKPLVPYGQVEVVQLDVGQGQAVILRTRHHAMLYDAGPRSGVVDLGARVVLPSLQKGGVAALDAMVISHAHADHAGGA
AAVARVLPVGRVIGGETEGLPAFLAAQPCNNGERWEWDGVSFEVWRWPGATSSNPKSCVLQVQARGERLLLTGDIDEAAE
TAFLASPLAVPTDWLQAPHHGSRSSSSWAFLQRLAPKSVLISRGRGNAFGHPHPQVMARYQALGSRVYDSAEQGAVRVQL
GSFRAPVVARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1027265 AB4P96_RS14010 WP_395600885.1 3058798..3061023(+) (comA) [Pseudomonas sp. B19125]
ATGAGAACAGGGATGTTCGCGTTCGGAATGGGCTTGTTGTCGCTGCGATTTTTACCCGCATTGCCCGCCACCGCGTGGCT
GCTGGCCATGTTGGTAGTGGCCTTGATGTTGCTGCCGTTTCGTACCTATCCGCTGGCGTTTTTGCTGTTGGGCGTGAGCT
GGGCGTGCATGAGCGCGCAATGGGCGTTGGACGACCGATTAAGGCCGGCTCTGGACGGTCAGACTCGCTGGGTTGAGGGG
CGCGTCATCGGGTTGCCGCAAAACACCAGCACCGGCGTGCGCTTCGAACTGACCGACAGCCGGTCACGCAAGGGCCGGCT
GCCCAAGCGTATCCGCCTGTCCTGGCATAACGGCCCGCAGGTTAACAGCGGCGAGCGCTGGCGGCTGGCGGTCACGCTCA
AGCGGCCGGCAGGCCTGCTCAATTTCCAGGGGTTTGACTACGAGGCCTGGCTGCTGGCCCAGCGCATCGGTGCCACCGGC
TCGGTGAAAGATGGCCAACGCCTGGCGCCGGCTCGCCACGCCTGGCGTGACAGCGTCCGCCAGCGCCTGCTGGCGGTGGA
TGCTCAGGGCCGCGAGGCGGGGCTGGCAGCCTTGGTGCTGGGCGACGGCTCGGGGTTGGCAACCGAGGATTGGCGGGTGT
TGCAGGACACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATTGGCTTGCTGGCCGGTTTGATCTACGCGCTG
GTGGCCGGGCTGGCGCGCTACGGTTGCTGGCCCCGCGCCTTGCCCTGGCTGCCGTGGGCCTGCGGCCTGGCATTTGCTGC
CGCGCTGGGGTATGGCCTGCTGGCGGGGTTCGGTGTGCCCGTGCAGCGGGCCTGCGTGATGGTCGGGTTGGTGCTGCTGT
GGCGTTTGCGGTTTCGCCACTTGGGTGTGTGGTGGCCGTTATTACTAGCGTTCAATGCGGTGCTGGTGCTGGAGCCGCTG
GCCAGCTTGCAGCCAGGGTTCTGGTTGTCGTTTGCCGCCGTGGCCGTGCTGGTGCTGGCATTCAGCGGGCGTTTGGGCGC
GTGGAGCGTCTGGCAGGCGTGGACCCGGCCCCAATGGCTGATCGCCATTGGTTTGTTTCCGGTGCTGCTGGTGCTGGGGT
TGCCCATCAGCCTCAGTGCGCCGGTGGCCAATCTGTTTGCCGTGCCGTGGATCAGCCTGGTGGTGCTGCCGTTGGCACTG
CTGGGCACTGTACTGTTGGCGGTACCGTGGGTGGGAGAGGGCTTGTTGTGGCTGGCCGGTGGCGCGTTGGATGGCCTGTT
CACAGGCTTGGCGCTGCTGGCTGGGCTGCGCGCAGCGTGGGTGCCCGCCGACGTGCCGTTGGGTTATTGGTTGATCAGCG
TCACGGGCGCGGTGCTCTTGCTCTTGCCCAAAGGCGTGCCATTGCGGCTGCTGGGCTGGCCGATGCTGCTGTTGGCCGTC
TTTGCCCCTAAACCATTGGTGCCGTACGGGCAGGTGGAGGTGGTGCAATTGGATGTCGGCCAGGGGCAGGCGGTGATCCT
GCGCACGCGCCATCACGCCATGCTCTACGACGCAGGCCCGCGCTCGGGGGTGGTTGACCTGGGCGCGCGCGTGGTGCTGC
CATCCCTGCAAAAGGGTGGGGTGGCGGCGTTGGACGCGATGGTGATCAGCCACGCTCACGCTGACCATGCCGGCGGTGCC
GCAGCGGTTGCCCGTGTGCTGCCCGTCGGAAGGGTTATCGGCGGAGAGACCGAAGGGCTGCCGGCTTTTCTCGCCGCCCA
GCCCTGTAACAATGGCGAGCGCTGGGAGTGGGATGGCGTGTCATTCGAGGTGTGGCGATGGCCTGGCGCCACCAGCAGCA
ATCCGAAATCCTGCGTCTTGCAGGTACAGGCCCGTGGCGAGCGGTTGCTACTGACGGGTGATATTGATGAGGCGGCTGAA
ACAGCCTTTCTCGCTTCGCCCTTGGCGGTGCCGACCGATTGGCTGCAAGCGCCGCACCATGGCAGTCGCAGTTCCTCGTC
CTGGGCGTTTTTACAGCGGCTTGCGCCCAAGTCGGTGCTGATTTCCCGCGGCCGTGGCAACGCATTCGGGCATCCCCATC
CGCAGGTGATGGCGCGTTACCAGGCGCTGGGCAGCCGGGTCTACGACAGCGCCGAGCAAGGTGCCGTGCGTGTGCAACTG
GGCAGTTTTAGAGCACCGGTTGTTGCGCGCAGTCAACGGCGATTCTGGCGCGAAGCGTTACCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.918

97.031

0.591
  comA Ralstonia pseudosolanacearum GMI1000

36.512

100

0.393

Multiple sequence alignment