Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AB4P96_RS14015 Genome accession   NZ_CP162589
Coordinates   3061133..3061768 (+) Length   211 a.a.
NCBI ID   WP_016969293.1    Uniprot ID   A0A0W0I137
Organism   Pseudomonas sp. B19125     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3056133..3066768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P96_RS14000 (AB4P96_13990) - 3056786..3058144 (+) 1359 WP_170040237.1 sensor histidine kinase -
  AB4P96_RS14005 (AB4P96_13995) - 3058148..3058663 (-) 516 WP_017136567.1 DUF2062 domain-containing protein -
  AB4P96_RS14010 (AB4P96_14000) comA 3058798..3061023 (+) 2226 WP_395600885.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB4P96_RS14015 (AB4P96_14005) exbB 3061133..3061768 (+) 636 WP_016969293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB4P96_RS14020 (AB4P96_14010) - 3061765..3062193 (+) 429 WP_017136564.1 biopolymer transporter ExbD -
  AB4P96_RS14025 (AB4P96_14015) lpxK 3062193..3063203 (+) 1011 WP_177035002.1 tetraacyldisaccharide 4'-kinase -
  AB4P96_RS14030 (AB4P96_14020) - 3063227..3063412 (+) 186 WP_003174668.1 Trm112 family protein -
  AB4P96_RS14035 (AB4P96_14025) kdsB 3063409..3064173 (+) 765 WP_058419882.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB4P96_RS14040 (AB4P96_14030) - 3064173..3064637 (+) 465 WP_395600886.1 low molecular weight protein-tyrosine-phosphatase -
  AB4P96_RS14045 (AB4P96_14035) murB 3064634..3065653 (+) 1020 WP_395600887.1 UDP-N-acetylmuramate dehydrogenase -
  AB4P96_RS14050 (AB4P96_14040) - 3065726..3066397 (-) 672 WP_058419884.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23007.15 Da        Isoelectric Point: 6.8771

>NTDB_id=1027266 AB4P96_RS14015 WP_016969293.1 3061133..3061768(+) (exbB) [Pseudomonas sp. B19125]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRITPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDFVEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1027266 AB4P96_RS14015 WP_016969293.1 3061133..3061768(+) (exbB) [Pseudomonas sp. B19125]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATTATCTTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGTTTGTGGACCCTGCGCGCCAGTCGCATAACCCCCGAGCATCTGCTGGGGCAGGTGTGGGGCTGGATCAAGAACA
AACAGCTGGATAAAGAAAAACTCAAGGAGTTACGCGCCAACTCGCCGTTGGGTGAAATCCTCGCAGCGGGCCTCGCCAAT
TCCAAACATGGTCGCGAGATCATGAAAGAATGCATCGAAGAGGCCGCTGCCCGCGTCATCCACGAAATGGAGCGCTATAT
CAATGCTCTCGGCACCATCGCAGCCATGGCGCCGCTGCTTGGTTTGCTGGGCACGGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGTTCAGGCATGACCACCAACGCTGCCGTCTTGGCCGGTGGTATTTCCAAGGCCTTGATCACCACGGCA
GCCGGCCTGATGGTCGGTATTCCGTCGGTGTTTTTCCACCGCTTCCTGCAGCGTCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGATGTCGATTTCGTTGAGGGTCGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0I137

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839

Multiple sequence alignment