Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AB4P90_RS17220 Genome accession   NZ_CP162588
Coordinates   3737995..3740220 (-) Length   741 a.a.
NCBI ID   WP_236713041.1    Uniprot ID   -
Organism   Pseudomonas sp. B16120     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3732995..3745220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P90_RS17185 (AB4P90_17130) murB 3733365..3734384 (-) 1020 WP_020303087.1 UDP-N-acetylmuramate dehydrogenase -
  AB4P90_RS17190 (AB4P90_17135) - 3734381..3734845 (-) 465 WP_014718874.1 low molecular weight protein-tyrosine-phosphatase -
  AB4P90_RS17195 (AB4P90_17140) kdsB 3734845..3735609 (-) 765 WP_038450504.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB4P90_RS17200 (AB4P90_17145) - 3735606..3735791 (-) 186 WP_003174668.1 Trm112 family protein -
  AB4P90_RS17205 (AB4P90_17150) lpxK 3735816..3736826 (-) 1011 WP_122301406.1 tetraacyldisaccharide 4'-kinase -
  AB4P90_RS17210 (AB4P90_17155) - 3736826..3737254 (-) 429 WP_014718877.1 biopolymer transporter ExbD -
  AB4P90_RS17215 (AB4P90_17160) exbB 3737251..3737886 (-) 636 WP_003192043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB4P90_RS17220 (AB4P90_17165) comA 3737995..3740220 (-) 2226 WP_236713041.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB4P90_RS17225 (AB4P90_17170) - 3740356..3740871 (+) 516 WP_003192045.1 DUF2062 domain-containing protein -
  AB4P90_RS17230 (AB4P90_17175) - 3740875..3742233 (-) 1359 WP_014718879.1 sensor histidine kinase -
  AB4P90_RS17235 (AB4P90_17180) - 3742220..3742948 (-) 729 WP_014718880.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80353.51 Da        Isoelectric Point: 10.5453

>NTDB_id=1027234 AB4P90_RS17220 WP_236713041.1 3737995..3740220(-) (comA) [Pseudomonas sp. B16120]
MKTGMLALALGLLMLRWLPALPPGGALLAMLVLALMLLPFRSYPLAFFLVGLSWACFSAQRALDDRLQPALDGQTRWVEG
RVVGLPQQTVTGVRFELADGRLRKGRLPKRIRVSWHGGPVVNSGERWRLALTLKRPAGLLNFHGVDHEAWLLAQRIGATA
TVKDGERLAPARNAWRDAVRQRVMAVDAQGREAGLAALVLGDGSGLAPEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGF
VAVLARYGCWPRTWPWLPWACGLAFGAALGYGLLAGFGVPVQRACMMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQVGFWLSFAAVAVLLLAFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLFAVPWISLVVLPLAL
LGTALLWVPLAGEAVLWLAGGALDGLFKGLALLAGQLPAWVPPEVPLAYWLVSLMGAVVLLLPKGVPFRVLGWPMLLMAV
FPPREWVPHGQVDVVQLDVGQGQALILRTRHHTLLYDAGPRSGPVDLGARVVLPSLKKLGVGQLDMMLLSHADADHAGGA
AAVARGLPVKRVVGGETEGLPAFLATQPCTSGERWEWDGVSFELWQWAGGLEGNPRSCVLHVQANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQAPHHGSRSSSSWPFVQRLAPTSVLISRGRSNTFGHPHPQVLERYQALGSRVYDSAEQGAVRLRL
GAFVPATVARSERRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1027234 AB4P90_RS17220 WP_236713041.1 3737995..3740220(-) (comA) [Pseudomonas sp. B16120]
ATGAAGACAGGGATGTTGGCGTTGGCGCTGGGGTTGCTGATGTTGCGTTGGTTGCCGGCCCTGCCGCCCGGCGGCGCGTT
ATTGGCCATGCTGGTGCTGGCCTTGATGCTGTTGCCTTTTCGGTCCTATCCCTTGGCCTTTTTTCTGGTGGGGTTGAGCT
GGGCTTGCTTCAGCGCGCAGCGGGCGTTGGATGATCGACTGCAGCCGGCCCTGGATGGGCAGACTCGTTGGGTGGAGGGG
CGTGTGGTCGGCTTGCCCCAGCAGACGGTTACGGGCGTGCGCTTTGAACTGGCCGACGGCCGGTTGCGCAAGGGGCGGCT
GCCCAAACGTATCCGCGTGTCCTGGCACGGCGGGCCAGTGGTGAACAGCGGCGAACGCTGGCGCCTGGCGCTGACACTCA
AGCGGCCTGCGGGCCTGCTCAATTTTCATGGAGTTGACCACGAAGCCTGGCTGCTGGCCCAGCGTATCGGTGCCACTGCA
ACGGTAAAAGATGGTGAACGCCTCGCACCGGCCCGCAATGCCTGGCGCGATGCTGTTCGCCAGCGCGTGATGGCGGTGGA
TGCCCAAGGCCGCGAGGCGGGCTTGGCGGCGTTGGTATTGGGCGACGGTTCCGGCTTGGCGCCTGAGGATTGGCAGGTGT
TGCAGGACACGGGCACGGTGCATCTGCTGGTGATTTCCGGGCAGCATATCGGCTTGTTGGCGGGCTTGATCTACGGCTTT
GTCGCGGTATTGGCGCGCTATGGTTGCTGGCCACGAACCTGGCCGTGGCTGCCGTGGGCGTGCGGCCTGGCTTTTGGCGC
AGCGTTGGGTTATGGCCTGCTGGCGGGGTTTGGCGTGCCGGTGCAGCGGGCTTGTATGATGGTCGGCCTGGTGTTGCTGT
GGCGTCTGCGTTTCCGCCATTTGGGGCTGTGGTGGCCGTTGCTGCTGGCGCTGAACGGCGTGCTGGTGCTGGAGCCCTTG
GCCAGCCTGCAGGTAGGGTTCTGGTTATCGTTTGCGGCGGTCGCGGTATTGTTGCTGGCGTTCGGCGGGCGCTTGGGGCC
GTGGAGCGTCTGGCAGGCGTGGACCCGGCCTCAGTGGTTGATTGCCATTGGCTTGTTTCCGGTGTTGCTGGTGTTGGGTT
TGCCCATCAGCCTCAGCGCACCGGTGGCCAATCTGTTTGCCGTGCCGTGGATCAGCCTGGTGGTGCTGCCCCTGGCGCTG
CTGGGCACGGCGTTGTTGTGGGTGCCGCTGGCGGGGGAAGCTGTGCTATGGCTGGCCGGCGGCGCGCTGGACGGATTGTT
CAAGGGCCTGGCGCTGCTGGCCGGGCAATTGCCGGCCTGGGTGCCGCCCGAGGTGCCGCTGGCGTATTGGCTGGTCAGCC
TGATGGGCGCAGTGGTGTTACTGCTGCCCAAAGGGGTGCCGTTCCGGGTGTTGGGCTGGCCCATGTTGTTGATGGCCGTT
TTCCCGCCCCGGGAGTGGGTGCCCCACGGACAGGTCGATGTGGTGCAACTGGATGTCGGCCAGGGGCAGGCACTGATCCT
GCGCACCCGCCATCACACCTTGCTCTACGATGCCGGGCCGCGCTCGGGGCCTGTCGACCTCGGCGCGCGCGTCGTGTTGC
CGTCGTTGAAAAAACTCGGGGTAGGGCAGTTGGACATGATGCTGCTCAGCCATGCCGACGCCGATCACGCCGGTGGTGCG
GCAGCAGTGGCTCGGGGGTTGCCCGTCAAACGCGTGGTGGGCGGCGAAACCGAGGGCTTGCCAGCCTTTCTCGCCACCCA
GCCCTGTACCAGCGGCGAACGATGGGAATGGGATGGTGTGTCGTTTGAACTGTGGCAGTGGGCGGGTGGGCTTGAGGGCA
ATCCGAGGTCGTGCGTGCTGCACGTCCAGGCCAATGGCGAACGCCTGCTGCTCACCGGCGACATTGATCGCGCTGCCGAA
CAGGCGTTTCTGGCATCCCCGCTGGCGGTTCCGACCGACTGGCTGCAGGCCCCGCACCATGGCAGCCGAAGTTCTTCGTC
CTGGCCTTTCGTACAACGGTTGGCGCCCACCTCTGTGCTGATTTCCCGCGGTCGCAGCAATACGTTCGGCCATCCTCATC
CGCAGGTCCTCGAACGCTACCAAGCACTGGGCAGCCGGGTGTATGACAGCGCCGAACAGGGCGCTGTGCGCCTGCGCCTG
GGGGCGTTTGTGCCTGCGACGGTTGCGCGCAGCGAACGTCGTTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.388

97.031

0.576
  comA Ralstonia pseudosolanacearum GMI1000

34.264

100

0.364

Multiple sequence alignment