Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AB4P90_RS17215 Genome accession   NZ_CP162588
Coordinates   3737251..3737886 (-) Length   211 a.a.
NCBI ID   WP_003192043.1    Uniprot ID   A0A0W0N0T4
Organism   Pseudomonas sp. B16120     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3732251..3742886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P90_RS17180 (AB4P90_17125) - 3732624..3733295 (+) 672 WP_003192030.1 Bax inhibitor-1/YccA family protein -
  AB4P90_RS17185 (AB4P90_17130) murB 3733365..3734384 (-) 1020 WP_020303087.1 UDP-N-acetylmuramate dehydrogenase -
  AB4P90_RS17190 (AB4P90_17135) - 3734381..3734845 (-) 465 WP_014718874.1 low molecular weight protein-tyrosine-phosphatase -
  AB4P90_RS17195 (AB4P90_17140) kdsB 3734845..3735609 (-) 765 WP_038450504.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB4P90_RS17200 (AB4P90_17145) - 3735606..3735791 (-) 186 WP_003174668.1 Trm112 family protein -
  AB4P90_RS17205 (AB4P90_17150) lpxK 3735816..3736826 (-) 1011 WP_122301406.1 tetraacyldisaccharide 4'-kinase -
  AB4P90_RS17210 (AB4P90_17155) - 3736826..3737254 (-) 429 WP_014718877.1 biopolymer transporter ExbD -
  AB4P90_RS17215 (AB4P90_17160) exbB 3737251..3737886 (-) 636 WP_003192043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB4P90_RS17220 (AB4P90_17165) comA 3737995..3740220 (-) 2226 WP_236713041.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB4P90_RS17225 (AB4P90_17170) - 3740356..3740871 (+) 516 WP_003192045.1 DUF2062 domain-containing protein -
  AB4P90_RS17230 (AB4P90_17175) - 3740875..3742233 (-) 1359 WP_014718879.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22910.04 Da        Isoelectric Point: 7.3615

>NTDB_id=1027233 AB4P90_RS17215 WP_003192043.1 3737251..3737886(-) (exbB) [Pseudomonas sp. B16120]
MWELVKSGGWMMLPIILSSIVALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1027233 AB4P90_RS17215 WP_003192043.1 3737251..3737886(-) (exbB) [Pseudomonas sp. B16120]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGTCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACTTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAAAAGCTCAAAGAGCTGCGTGCCAATTCGCCACTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCGGCCGCCCGGGTTATTCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACTATCGCCGCCATGGCGCCGTTGCTGGGTTTGCTCGGCACGGTATTGGGCATGATCGATATCTTCA
GTGCGTTCACGGGCTCGGGCATGACCACCAACGCGTCGGTATTGGCCGGGGGCATTTCCAAGGCCCTGATCACCACTGCT
GCGGGCTTGATGGTGGGTATCCCTTCGGTGTTTTTCCACCGTTTCCTGCAGCGGCGCATTGATGAGCTGGTGGTCGGTAT
GGAACAGGAAGCCATCAAGCTGGTAGAAGTGGTGCAGGGCGACCGTGATGTAGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N0T4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment