Detailed information NTG1027187

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AB4P97_RS19205
• Genome accession: NZ_CP162582
• Coordinates: 4099005..4100351 (+)
• Length: 448 a.a.
• NCBI ID: WP_395601479.1
• Uniprot ID: -
• Organism: Pseudomonas sp. A1230
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4094005..4105351

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4P97_RS19180 (AB4P97_19135)	pgeF	4094220..4094942 (-)	723	WP_395601477.1	peptidoglycan editing factor PgeF	-
AB4P97_RS19185 (AB4P97_19140)	rluD	4094939..4095901 (-)	963	WP_042561128.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
AB4P97_RS19190 (AB4P97_19145)	-	4096053..4097069 (+)	1017	WP_042561129.1	outer membrane protein assembly factor BamD	-
AB4P97_RS19195 (AB4P97_19150)	-	4097196..4097429 (+)	234	WP_042561130.1	PP0621 family protein	-
AB4P97_RS19200 (AB4P97_19155)	pilS	4097419..4099008 (+)	1590	WP_395601478.1	sensor histidine kinase	Regulator
AB4P97_RS19205 (AB4P97_19160)	pilR	4099005..4100351 (+)	1347	WP_395601479.1	sigma-54-dependent transcriptional regulator	Regulator
AB4P97_RS19210 (AB4P97_19165)	thiO	4100481..4101581 (-)	1101	WP_042561133.1	glycine oxidase ThiO	-
AB4P97_RS19215 (AB4P97_19170)	-	4101639..4102040 (-)	402	WP_047303296.1	type IV pilin protein	-
AB4P97_RS19220 (AB4P97_19175)	-	4102056..4105145 (-)	3090	WP_042561135.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50076.41 Da
• Isoelectric Point: 6.3282

>NTDB_id=1027187 AB4P97_RS19205 WP_395601479.1 4099005..4100351(+) (pilR) [Pseudomonas sp. A1230]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLNSYSARNLGEAQALLQRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVATALRMPAAGDASTSIDRRLLGDSPPMRNLRKQVDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAGKPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAQGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIEVLA
AHMLQRLAKDTGQPAALLHLHALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAADGAIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=1027187 AB4P97_RS19205 WP_395601479.1 4099005..4100351(+) (pilR) [Pseudomonas sp. A1230]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCCGATATCCGCGAACTCCTGGAAATCACTCTGGG
ACGGATGAAACTCAACAGCTACAGCGCACGCAATCTGGGTGAGGCCCAGGCGCTGTTGCAGCGCGAGACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACGGGGCTGGAACTGGTGCAGCATATTCAGCAACGTTATCCACAACTGCCG
GTGGCGATGATCACCGCGTACGGCAGCCTGGAAACGGCAATCAATGCGTTGAAGGCGGGAGCTTTCGACTTTCTGACCAA
ACCGGTAGATCTCACCCGACTGCGGGAATTGGTCGCGACAGCACTGCGCATGCCCGCCGCTGGCGACGCAAGCACCTCAA
TTGATCGCCGCTTGCTGGGTGATTCGCCGCCGATGCGCAACTTGCGCAAACAAGTCGACAAGCTCGCTCGCAGCCAGGCA
CCGGTGTACATCAGCGGCGAATCCGGCAGCGGCAAAGAGCTGGTCGCACGACTGATCCACGAACAAGGGCCTCGCGCCGG
CAAGCCGTTCGTGCCGGTGAACTGCGGGGCAATACCCTCGGAACTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCA
GTTTTACCGGCGCGGTCGAGGACAAACCGGGCCTGTTCCAGGCAGCACAGGGCGGGACATTGTTTCTCGATGAAGTGGCG
GACTTGCCACTGTCGATGCAGGTGAAGCTGCTGCGGGCGATTCAGGAAAAAGCCGTACGCAGTGTCGGCGGTCAGCAGGA
AACCGTGGTCGATGTGCGCATTCTCTGCGCGACGCACAAGGACCTCGACGCAGAAGTCGCCGCCGAGCGCTTTCGTCAGG
ATCTTTATTACCGGCTAAACGTGATCGAATTGCGTGTGCCGCCCCTGCGCGAGCGACGGGATGACATTGAAGTGCTGGCG
GCGCACATGCTTCAGCGCCTGGCCAAAGACACCGGCCAACCAGCGGCACTCCTTCATCTGCACGCTTTGGAGGCTCTGAA
AAACTATCGGTTTCCGGGGAATGTGCGGGAACTGGAGAACGTGCTCGAACGGGCGCATACCTTGTGCGAGAACCGTACGA
TCGAGGCTGAAGATTTGCGCTTGAGCGAAGGCAACTGTGCAGCGGATGGCGCGATTGCCGATCTGACGCAGATCGACAAT
CTGGAAGATTATCTGGAGAACGTCGAACGTAAACTGATTTTGCAGGCGCTGGAGGAGACCCGCTGGAATCGGACTGCGGC
GGCGCAGCGGTTGAGTCTTTCATTCAGGTCGATGCGTTACAGACTGAAAAAACTCGGTCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.233	98.884	0.783
pilR	Acinetobacter baumannii strain A118	49.02	100	0.502