Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AB4P97_RS19200 Genome accession   NZ_CP162582
Coordinates   4097419..4099008 (+) Length   529 a.a.
NCBI ID   WP_395601478.1    Uniprot ID   -
Organism   Pseudomonas sp. A1230     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4092419..4104008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P97_RS19180 (AB4P97_19135) pgeF 4094220..4094942 (-) 723 WP_395601477.1 peptidoglycan editing factor PgeF -
  AB4P97_RS19185 (AB4P97_19140) rluD 4094939..4095901 (-) 963 WP_042561128.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AB4P97_RS19190 (AB4P97_19145) - 4096053..4097069 (+) 1017 WP_042561129.1 outer membrane protein assembly factor BamD -
  AB4P97_RS19195 (AB4P97_19150) - 4097196..4097429 (+) 234 WP_042561130.1 PP0621 family protein -
  AB4P97_RS19200 (AB4P97_19155) pilS 4097419..4099008 (+) 1590 WP_395601478.1 sensor histidine kinase Regulator
  AB4P97_RS19205 (AB4P97_19160) pilR 4099005..4100351 (+) 1347 WP_395601479.1 sigma-54-dependent transcriptional regulator Regulator
  AB4P97_RS19210 (AB4P97_19165) thiO 4100481..4101581 (-) 1101 WP_042561133.1 glycine oxidase ThiO -
  AB4P97_RS19215 (AB4P97_19170) - 4101639..4102040 (-) 402 WP_047303296.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58577.38 Da        Isoelectric Point: 7.0066

>NTDB_id=1027186 AB4P97_RS19200 WP_395601478.1 4097419..4099008(+) (pilS) [Pseudomonas sp. A1230]
MIAEASHADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRNGSWLYLALNILLVVFLENTRRPAQLF
SLALVDVLMLCGLFYAAGGVASALGNLLIVSVAISNTLLRRRIGLLIAAIGAIGIVGLSFLLSFSHPLSANEYLQAGTLG
ALCFAASLLVQGLVRRLEVSETLAEQTASKVVGLEALNALILQRMRTGILVLDEQRRVQLANHSAQTLLAQSHLQGHLID
DYSTALVERLQLWLNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLGESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVTESRMQATER
QKIHLRINSGDFATLMDPNQLTQILDNLLRNGWRHSAMLHDQAEVWLALFIEPESQLAVLEVQDNGPGVPLDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFNPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1027186 AB4P97_RS19200 WP_395601478.1 4097419..4099008(+) (pilS) [Pseudomonas sp. A1230]
GTGATCGCTGAGGCCTCCCACGCCGACAGCAAACAGGCTCAGCGTCTGCTGCGCCTTTATCATCTTTACCGTTTAAGTGT
CGGCATCACCTTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCA
ACGGCAGCTGGCTGTATCTGGCGCTGAACATTTTGCTGGTGGTGTTCCTGGAGAACACCCGACGCCCCGCGCAATTGTTC
AGCCTGGCGCTGGTCGACGTTCTGATGCTGTGCGGCTTGTTCTACGCGGCTGGCGGCGTGGCCAGTGCGCTCGGCAACTT
GCTGATCGTTTCTGTGGCGATCAGCAATACCTTGCTGCGCCGCCGCATCGGTCTGCTGATCGCCGCCATCGGCGCCATCG
GCATTGTCGGTTTAAGCTTTCTGCTGAGTTTCAGCCATCCCCTGAGCGCCAACGAATACCTGCAGGCCGGCACCCTCGGC
GCGTTGTGTTTTGCCGCGTCGTTGCTGGTGCAGGGGCTGGTCCGGCGGCTGGAGGTCAGCGAAACCCTGGCCGAGCAAAC
CGCCAGCAAAGTGGTCGGTCTGGAGGCTCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGGATCCTGGTGCTCGACG
AACAACGCAGGGTACAGCTGGCCAATCACAGCGCGCAGACCCTGCTCGCGCAATCGCACCTTCAGGGCCATTTGATCGAC
GATTACTCGACCGCGCTGGTCGAACGCCTGCAACTGTGGCTGAACAACCCGACACTGCGCCCACAAAGTCTGAAAATCCC
CGGCAACGGCCTGGAACTGCAGCCAAGCTTCATCGCCCTCGAACAAAGCCCCAATCAGCAAACCCTGGTGTTTCTCGAAG
ACCTCGCGCAGATCGCTCAACAAGCCCAGCAACTGAAACTTGCCGCGCTCGGGCGTTTGACGGCCGGCATTTCCCACGAG
ATTCGCAATCCGCTGGGCGCCATCAGTCATGCCGCGCAGTTGTTGGGGGAGTCCGAGGAACTCGATAGCGCGGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTTATCGAAAACGTCCTGCAACTGTCCCGCCGTCAAC
AGAGCGCTCCACAACGGCTGGACCTCAAGCCGTGGCTGGAAAACTTCGTCACTGAGAGCCGAATGCAGGCTACCGAGCGG
CAGAAGATTCATCTGCGGATCAACTCGGGCGACTTCGCCACCCTGATGGATCCCAACCAGCTCACACAAATTCTCGACAA
TCTTTTACGCAACGGCTGGCGTCACAGCGCCATGCTGCATGATCAGGCCGAGGTCTGGCTGGCCCTGTTCATCGAACCCG
AGAGCCAACTGGCGGTACTCGAGGTTCAGGACAACGGCCCCGGCGTACCGCTTGATCAGCAAGCGCATCTGTTCGAACCG
TTCTTCACCACTAGCAGCCAAGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTCAATCCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.811

100

0.599

Multiple sequence alignment