Detailed information NTG1027180

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: AB4P97_RS15610
• Genome accession: NZ_CP162582
• Coordinates: 3327948..3330182 (-)
• Length: 744 a.a.
• NCBI ID: WP_395601309.1
• Uniprot ID: -
• Organism: Pseudomonas sp. A1230
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3322948..3335182

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4P97_RS15575 (AB4P97_15555)	murB	3323327..3324346 (-)	1020	WP_395601307.1	UDP-N-acetylmuramate dehydrogenase	-
AB4P97_RS15580 (AB4P97_15560)	-	3324343..3324807 (-)	465	WP_047302609.1	low molecular weight protein-tyrosine-phosphatase	-
AB4P97_RS15585 (AB4P97_15565)	kdsB	3324807..3325571 (-)	765	WP_042560448.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AB4P97_RS15590 (AB4P97_15570)	-	3325568..3325753 (-)	186	WP_003174668.1	Trm112 family protein	-
AB4P97_RS15595 (AB4P97_15575)	lpxK	3325776..3326786 (-)	1011	WP_395601308.1	tetraacyldisaccharide 4'-kinase	-
AB4P97_RS15600 (AB4P97_15580)	-	3326786..3327214 (-)	429	WP_042560450.1	biopolymer transporter ExbD	-
AB4P97_RS15605 (AB4P97_15585)	exbB	3327211..3327846 (-)	636	WP_042560451.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
AB4P97_RS15610 (AB4P97_15590)	comA	3327948..3330182 (-)	2235	WP_395601309.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
AB4P97_RS15615 (AB4P97_15595)	-	3330319..3330837 (+)	519	WP_210622796.1	DUF2062 domain-containing protein	-
AB4P97_RS15620 (AB4P97_15600)	-	3330991..3331770 (-)	780	WP_042560454.1	ABC transporter permease	-
AB4P97_RS15625 (AB4P97_15605)	-	3331767..3332699 (-)	933	WP_042560455.1	ABC transporter ATP-binding protein	-
AB4P97_RS15630 (AB4P97_15610)	-	3332836..3333459 (-)	624	WP_395601310.1	glutathione S-transferase family protein	-
AB4P97_RS15635 (AB4P97_15615)	-	3333503..3334162 (-)	660	WP_395601311.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81832.07 Da
• Isoelectric Point: 10.0783

>NTDB_id=1027180 AB4P97_RS15610 WP_395601309.1 3327948..3330182(-) (comA) [Pseudomonas sp. A1230]
MRTGMMALAVGLLAPIFMPALPPVWLMVLLAVVALMLLPFRSYPLAFLLFGFTWACVSAHWALQDRLPVALDGETRWLEG
RVVGLPQNSDGVVRFELADAHSRHGKLPSLMRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKEGQRLGEARWAWRDSIRQRLLAVDAQGRGGALAALVLGDGSGLSREDWQSLQDTGTVHLLVISGQHIGMLAAVMYLL
VAGLARYGLWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFRGLALIAGQWPAWIAPSLPGWALAIGSLGAALLLLPRGVPLRPLGWPLVLILV
MPPRERLDAGLADVWQLDVGQGLAILIRTRHHALLYDAGPRFRDFDLGERVVLPALRKLNVETLDLMLLSHADADHAGGA
LAVARRLQVKQVISGDPPGLPAELNAHACESGRQWQWDGVSFQLWQWADAQDSNQRSCVLQIEANGERLLLTGDIDKHAE
RVLLQGPLNVPTQWLQAPHHGSRSSSSMALLKALKPDAVLISRGQGNSFGHPHPTVVARYRQQGLRIYDSAEHGAIHLQL
GAFKPPWTMRQYLRFWREPPLSSH

Nucleotide

• Length: 2235 bp

>NTDB_id=1027180 AB4P97_RS15610 WP_395601309.1 3327948..3330182(-) (comA) [Pseudomonas sp. A1230]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTTTGCTTGCTCCGATATTTATGCCGGCCTTACCGCCGGTCTGGTTGAT
GGTGTTGCTGGCGGTCGTGGCTTTGATGTTGCTGCCGTTTCGCAGCTATCCATTGGCTTTTCTGCTTTTTGGTTTCACCT
GGGCTTGCGTCAGCGCGCATTGGGCGTTGCAGGATCGCTTGCCGGTGGCGCTGGATGGCGAGACCCGTTGGCTCGAAGGG
CGCGTGGTCGGGTTGCCACAAAACAGCGACGGCGTGGTTCGTTTCGAATTGGCGGACGCCCATTCGCGCCACGGCAAACT
GCCGTCACTGATGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAGCGCTGGCGCCTGGCGGTCAAGCTAA
AGCGCCCGGGCGGTTTACTCAATCCGGACGCCTTTGATTACGAAGCCTGGCTACTCGCCCAACGCATTGGTGCAACGGGC
ACGGTCAAGGAGGGTCAGCGCCTTGGCGAGGCGCGATGGGCGTGGCGCGACAGCATTCGTCAGCGCTTGCTGGCGGTCGA
CGCGCAGGGCCGGGGAGGGGCGCTGGCGGCGCTGGTGCTGGGCGATGGCTCGGGCCTGAGTCGCGAGGATTGGCAAAGTC
TGCAAGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGCCAGCACATCGGCATGCTGGCGGCGGTGATGTACTTGCTG
GTCGCCGGGCTGGCCCGATATGGTCTGTGGCCGCTGCGTTGGCCGTGGCTGCCTTGGGCCTGTGGTCTGGCCTTCGCCGC
GGCACTGGGTTACGGCTTGCTCGCCGGATTTGATGTGCCGGTGCAAAGGGCCTGCGTGATGGTCGGGCTGGTGCTGTTGT
GGCGCCTGCGCTTTCGGCATCTCGGCGCCTGGTGGCCACTGTTGCTGGCGTTTAATGGCGTGCTGTTGCTGGATCCGCTG
GCCAGTCTGCGCCCCGGTTTCTGGTTGTCCTTCGCGGCGGTGGCGGTGCTGATCTTCACCTTTGGCGGGCGCCTTGGGGC
ATGGCGCTGGTGGCAGACCTGGACGCGGGCGCAATGGTTGATCGCGATCGGCCTCTGCCCGGTGTTGTTGGCGCTGAATC
TGCCGATCAGCCTCAGTGGGCCGTTGGCGAATTTGCTGGCGGTGCCTTGGGTCAGTCTGGTGGTGCTGCCCCCGGCATTG
CTTGGGACTCTGTTGTTGCCAGTGCCGTATGTCGGCGAAGGGCTGTTGTGGCTGGCGGGTGGTTTGATCGACTGGCTGTT
CCGCGGCCTAGCGCTGATCGCCGGGCAGTGGCCGGCGTGGATTGCGCCGTCGCTTCCCGGTTGGGCGTTGGCTATCGGCA
GTCTCGGTGCGGCGCTGTTGCTGTTGCCGCGAGGGGTACCGCTGCGTCCCTTGGGCTGGCCATTGGTGTTGATTCTGGTC
ATGCCACCCCGGGAGCGGCTGGACGCCGGACTGGCCGATGTCTGGCAACTCGATGTCGGCCAGGGCCTGGCGATTCTGAT
CCGTACTCGTCATCACGCGCTGCTCTACGATGCCGGGCCGCGGTTCCGCGATTTCGATCTTGGCGAACGTGTTGTCTTGC
CGGCCCTGCGCAAATTGAATGTCGAGACACTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGTGGTGCT
TTGGCCGTTGCGCGCCGTTTGCAGGTGAAGCAAGTCATCAGCGGCGATCCGCCGGGGCTGCCAGCCGAACTGAACGCGCA
CGCGTGTGAAAGTGGCCGGCAATGGCAGTGGGACGGTGTCAGTTTTCAACTCTGGCAATGGGCGGACGCTCAGGACAGCA
ATCAGCGCTCCTGCGTGTTGCAGATCGAGGCCAATGGTGAGCGCCTGCTGCTGACCGGCGATATTGATAAACACGCCGAG
CGAGTCTTGCTGCAAGGCCCTCTGAACGTGCCTACTCAATGGTTGCAAGCCCCGCACCACGGCAGCCGCAGTTCATCATC
GATGGCATTGCTCAAAGCGTTGAAACCCGACGCCGTCTTGATATCCCGTGGTCAGGGCAACTCGTTCGGTCATCCGCATC
CGACCGTCGTTGCGCGTTATCGCCAGCAAGGGCTGCGTATTTACGACAGCGCCGAGCACGGTGCCATTCATCTGCAACTT
GGGGCGTTCAAACCACCGTGGACAATGCGCCAGTACCTGCGTTTCTGGCGTGAACCGCCGCTGTCCTCCCATTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.687	96.237	0.613
comA	Ralstonia pseudosolanacearum GMI1000	34.149	100	0.375