Detailed information NTG1027165

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: AB4P92_RS24000
• Genome accession: NZ_CP162581
• Coordinates: 5176264..5178498 (+)
• Length: 744 a.a.
• NCBI ID: WP_395598258.1
• Uniprot ID: -
• Organism: Pseudomonas sp. A0308
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5171264..5183498

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4P92_RS23975 (AB4P92_23925)	-	5172284..5172943 (+)	660	WP_395598256.1	transglutaminase family protein	-
AB4P92_RS23980 (AB4P92_23930)	-	5172987..5173610 (+)	624	WP_395598257.1	glutathione S-transferase family protein	-
AB4P92_RS23985 (AB4P92_23935)	-	5173747..5174679 (+)	933	WP_042560455.1	ABC transporter ATP-binding protein	-
AB4P92_RS23990 (AB4P92_23940)	-	5174676..5175455 (+)	780	WP_042560454.1	ABC transporter permease	-
AB4P92_RS23995 (AB4P92_23945)	-	5175609..5176127 (-)	519	WP_210622796.1	DUF2062 domain-containing protein	-
AB4P92_RS24000 (AB4P92_23950)	comA	5176264..5178498 (+)	2235	WP_395598258.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
AB4P92_RS24005 (AB4P92_23955)	exbB	5178600..5179235 (+)	636	WP_042560451.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
AB4P92_RS24010 (AB4P92_23960)	-	5179232..5179660 (+)	429	WP_042560450.1	biopolymer transporter ExbD	-
AB4P92_RS24015 (AB4P92_23965)	lpxK	5179660..5180670 (+)	1011	WP_200616880.1	tetraacyldisaccharide 4'-kinase	-
AB4P92_RS24020 (AB4P92_23970)	-	5180693..5180878 (+)	186	WP_003174668.1	Trm112 family protein	-
AB4P92_RS24025 (AB4P92_23975)	kdsB	5180875..5181639 (+)	765	WP_042560448.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AB4P92_RS24030 (AB4P92_23980)	-	5181639..5182103 (+)	465	WP_047302609.1	low molecular weight protein-tyrosine-phosphatase	-
AB4P92_RS24035 (AB4P92_23985)	murB	5182100..5183119 (+)	1020	WP_395598259.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81840.09 Da
• Isoelectric Point: 10.0782

>NTDB_id=1027165 AB4P92_RS24000 WP_395598258.1 5176264..5178498(+) (comA) [Pseudomonas sp. A0308]
MRTGMMALAVGLLAPIFMPALPPVWLMVLLAVVALMLLPFRSYPLAFLLFGFTWACVSAHWALQDRLPVALDGETRWLEG
RVVGLPQNSDGVVRFELADAHSRHGKLPSLMRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKEGQRLGEARWAWRDSIRQRLLAVDAQGRGGALAALVLGDGSGLSREDWQTLQDTGTVHLLVISGQHIGMLAAVMYLL
VAGLARYGLWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANFLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFRGLALIAGQWPAWIAPSLPGWALAIGSLGAALLLLPRGVPLRPLGWPLLLILV
MPPRERLDAGLADVWQLDVGQGLAILIRTRHHALLYDAGPRFRDFDLGERVVLPALRKLNVETLDLMLLSHADADHAGGA
LAVARRLQVKQVISGDPPGLPAELNAQACESGRQWQWDGVSFQLWQWADAQDSNQRSCVLQIEANGERLLLTGDIDKQAE
RVLLQGPLNVPTQWLQAPHHGSRSSSSMALLKALKPDAVLISRGQGNSFGHPHPTVIARYRQQGLRIYDSAEHGAIHLQL
GAFKPPWTMRQYPRFWREPPLSSH

Nucleotide

• Length: 2235 bp

>NTDB_id=1027165 AB4P92_RS24000 WP_395598258.1 5176264..5178498(+) (comA) [Pseudomonas sp. A0308]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTTTGCTTGCTCCGATATTTATGCCGGCCTTACCGCCGGTCTGGTTGAT
GGTGTTGCTGGCGGTCGTGGCTTTGATGTTGCTGCCGTTTCGCAGCTATCCATTGGCTTTTCTGCTTTTTGGTTTCACCT
GGGCTTGCGTCAGCGCGCATTGGGCGTTGCAGGATCGCTTGCCGGTGGCGCTGGATGGCGAGACCCGTTGGCTCGAAGGG
CGCGTGGTCGGGTTGCCGCAAAACAGCGACGGCGTGGTTCGTTTCGAGTTGGCGGATGCCCATTCGCGCCACGGCAAACT
GCCGTCACTGATGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAGCGCTGGCGCCTGGCGGTCAAGCTCA
AGCGCCCGGGCGGGTTGCTCAATCCGGACGCCTTTGATTACGAAGCCTGGCTACTCGCCCAACGCATTGGCGCAACGGGC
ACGGTCAAGGAGGGTCAGCGCCTTGGCGAGGCGCGATGGGCGTGGCGCGACAGCATTCGTCAGCGCTTGCTGGCGGTCGA
CGCGCAGGGCCGGGGAGGGGCGCTGGCGGCGCTGGTGCTCGGCGATGGCTCGGGCCTGAGTCGCGAGGATTGGCAGACTC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATTTCCGGCCAGCACATCGGCATGCTGGCGGCGGTGATGTACTTGCTG
GTCGCCGGGCTGGCCCGATATGGTCTGTGGCCGCTGCGTTGGCCGTGGCTGCCTTGGGCCTGTGGCCTGGCCTTTGCCGC
GGCACTCGGTTACGGCTTGCTCGCCGGATTTGATGTGCCGGTGCAAAGGGCCTGCGTGATGGTCGGGCTGGTGCTGTTGT
GGCGCCTGCGCTTTCGTCATCTCGGCGCCTGGTGGCCACTGTTGCTGGCGTTTAATGGCGTGCTGTTGCTGGATCCGCTG
GCTAGTCTGCGCCCCGGCCTCTGGTTGTCATTTGCGGCGGTGGCGGTGCTGATCTTCACCTTTGGCGGGCGCCTTGGGGC
ATGGCGCTGGTGGCAGACCTGGACGCGAGCGCAGTGGTTGATCGCGATCGGCCTCTGCCCGGTGTTGTTGGCGCTGAATC
TGCCGATCAGCCTCAGTGGGCCGTTGGCAAATTTCCTGGCGGTTCCTTGGGTCAGTCTGGTGGTGCTGCCCCCGGCATTG
CTCGGGACTCTGTTGTTGCCAGTGCCGTATGTCGGCGAAGGGCTGTTGTGGCTGGCGGGTGGTTTGATCGACTGGCTGTT
CCGCGGCCTGGCGCTGATCGCCGGGCAGTGGCCGGCGTGGATTGCGCCGTCGCTTCCCGGTTGGGCGTTGGCTATCGGCA
GTCTCGGTGCGGCGCTGTTGCTGTTGCCGCGAGGGGTACCGCTGCGTCCCTTGGGCTGGCCATTGTTGTTGATTCTGGTC
ATGCCACCCCGGGAGCGGCTGGACGCCGGACTGGCCGATGTCTGGCAACTCGATGTCGGCCAGGGCCTGGCGATTCTGAT
CCGTACTCGTCATCACGCGCTGCTCTACGATGCCGGGCCGCGGTTCCGCGATTTCGATCTTGGCGAACGTGTTGTCTTGC
CGGCCCTGCGCAAATTGAATGTCGAGACACTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGTGGTGCT
TTGGCCGTTGCGCGCCGTTTGCAGGTGAAGCAAGTCATCAGCGGCGATCCGCCGGGGCTGCCAGCCGAACTGAACGCGCA
GGCGTGTGAAAGTGGCCGGCAATGGCAGTGGGACGGTGTCAGTTTTCAACTCTGGCAATGGGCGGACGCTCAGGACAGCA
ATCAGCGCTCCTGCGTGTTGCAGATCGAGGCCAATGGTGAGCGCCTGCTGCTGACCGGCGATATTGATAAACAGGCCGAG
CGAGTCTTGCTGCAAGGCCCTCTGAACGTGCCTACTCAATGGTTGCAAGCCCCGCACCACGGCAGCCGCAGTTCATCATC
GATGGCATTGCTCAAAGCGTTGAAACCCGATGCCGTTTTGATATCCCGTGGTCAGGGCAACTCGTTCGGTCATCCGCATC
CGACCGTCATTGCGCGTTATCGCCAGCAAGGGTTGCGTATTTACGACAGTGCCGAGCACGGTGCCATTCATCTGCAACTT
GGGGCGTTCAAACCACCGTGGACAATGCGCCAGTACCCGCGTTTCTGGCGTGAACCGCCGCTGTCCTCCCATTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.827	96.237	0.614
comA	Ralstonia pseudosolanacearum GMI1000	34.129	100	0.384