Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AB4P92_RS24005 Genome accession   NZ_CP162581
Coordinates   5178600..5179235 (+) Length   211 a.a.
NCBI ID   WP_042560451.1    Uniprot ID   -
Organism   Pseudomonas sp. A0308     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5173600..5184235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P92_RS23985 (AB4P92_23935) - 5173747..5174679 (+) 933 WP_042560455.1 ABC transporter ATP-binding protein -
  AB4P92_RS23990 (AB4P92_23940) - 5174676..5175455 (+) 780 WP_042560454.1 ABC transporter permease -
  AB4P92_RS23995 (AB4P92_23945) - 5175609..5176127 (-) 519 WP_210622796.1 DUF2062 domain-containing protein -
  AB4P92_RS24000 (AB4P92_23950) comA 5176264..5178498 (+) 2235 WP_395598258.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB4P92_RS24005 (AB4P92_23955) exbB 5178600..5179235 (+) 636 WP_042560451.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB4P92_RS24010 (AB4P92_23960) - 5179232..5179660 (+) 429 WP_042560450.1 biopolymer transporter ExbD -
  AB4P92_RS24015 (AB4P92_23965) lpxK 5179660..5180670 (+) 1011 WP_200616880.1 tetraacyldisaccharide 4'-kinase -
  AB4P92_RS24020 (AB4P92_23970) - 5180693..5180878 (+) 186 WP_003174668.1 Trm112 family protein -
  AB4P92_RS24025 (AB4P92_23975) kdsB 5180875..5181639 (+) 765 WP_042560448.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB4P92_RS24030 (AB4P92_23980) - 5181639..5182103 (+) 465 WP_047302609.1 low molecular weight protein-tyrosine-phosphatase -
  AB4P92_RS24035 (AB4P92_23985) murB 5182100..5183119 (+) 1020 WP_395598259.1 UDP-N-acetylmuramate dehydrogenase -
  AB4P92_RS24040 (AB4P92_23990) - 5183458..5183928 (+) 471 WP_096794874.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22941.07 Da        Isoelectric Point: 6.8771

>NTDB_id=1027166 AB4P92_RS24005 WP_042560451.1 5178600..5179235(+) (exbB) [Pseudomonas sp. A0308]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1027166 AB4P92_RS24005 WP_042560451.1 5178600..5179235(+) (exbB) [Pseudomonas sp. A0308]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCGATTGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACTTGTTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAGTTGCGCGCCAATTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCTGCCCGGGTCATTCACGAGCTCGAGCGCTACAT
CAATGCACTCGGCACCATCGCCGCCATGGCGCCGTTGCTGGGTTTGCTCGGCACCGTGCTCGGCATGATCGACATTTTCA
GCGCGTTCACCGGCTCCGGCATGACCACCAACGCCTCGGTTCTGGCCGGTGGTATCTCCAAAGCGCTGATCACCACGGCT
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTTGAAGTGGTGCAGGGCGACCGTGACGTCGACCTGGCTGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment