Detailed information NTG1027158

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AB4P92_RS20310
• Genome accession: NZ_CP162581
• Coordinates: 4390893..4392239 (-)
• Length: 448 a.a.
• NCBI ID: WP_042561132.1
• Uniprot ID: A0A9X4H9K0
• Organism: Pseudomonas sp. A0308
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4385893..4397239

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4P92_RS20295 (AB4P92_20265)	-	4386099..4389188 (+)	3090	WP_395598057.1	pilus assembly protein	-
AB4P92_RS20300 (AB4P92_20270)	-	4389204..4389605 (+)	402	WP_395598058.1	type IV pilin protein	-
AB4P92_RS20305 (AB4P92_20275)	thiO	4389663..4390763 (+)	1101	WP_042561133.1	glycine oxidase ThiO	-
AB4P92_RS20310 (AB4P92_20280)	pilR	4390893..4392239 (-)	1347	WP_042561132.1	sigma-54 dependent transcriptional regulator	Regulator
AB4P92_RS20315 (AB4P92_20285)	pilS	4392236..4393825 (-)	1590	WP_395598059.1	sensor histidine kinase	Regulator
AB4P92_RS20320 (AB4P92_20290)	-	4393815..4394048 (-)	234	WP_042561130.1	PP0621 family protein	-
AB4P92_RS20325 (AB4P92_20295)	-	4394175..4395191 (-)	1017	WP_042561129.1	outer membrane protein assembly factor BamD	-
AB4P92_RS20330 (AB4P92_20300)	rluD	4395343..4396305 (+)	963	WP_042561128.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
AB4P92_RS20335 (AB4P92_20305)	pgeF	4396302..4397024 (+)	723	WP_395598060.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50066.39 Da
• Isoelectric Point: 6.3269

>NTDB_id=1027158 AB4P92_RS20310 WP_042561132.1 4390893..4392239(-) (pilR) [Pseudomonas sp. A0308]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLNSYSARNLGEAQALLQRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVATALRMPAAGDASTSIDRRLLGDSPPMRNLRKQVDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAGKPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAQGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIEVLA
AHMLQRLAKDTGQPAACLHLHALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAADGAIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=1027158 AB4P92_RS20310 WP_042561132.1 4390893..4392239(-) (pilR) [Pseudomonas sp. A0308]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCCGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCAACAGCTACAGCGCACGCAATCTGGGGGAGGCCCAGGCGCTGTTGCAGCGCGAGACCTTCGACCTGT
GCCTGACAGACATGCGCCTGCCCGATGGCACGGGACTGGAACTGGTGCAGCATATTCAGCAACGTTATCCACAACTGCCG
GTGGCGATGATCACCGCGTACGGCAGCCTGGAAACGGCAATCAATGCGTTGAAGGCGGGAGCTTTCGACTTTCTGACCAA
ACCGGTAGATCTCACCCGACTGCGGGAATTGGTCGCGACAGCACTGCGCATGCCCGCCGCTGGCGACGCAAGCACCTCAA
TTGATCGACGCTTGCTGGGTGATTCGCCGCCGATGCGCAACCTGCGCAAACAAGTCGACAAGCTCGCTCGCAGCCAGGCC
CCGGTGTACATCAGCGGCGAATCCGGCAGCGGCAAAGAGCTGGTCGCACGACTGATCCACGAACAAGGGCCTCGCGCCGG
CAAGCCGTTCGTGCCGGTGAACTGCGGGGCAATACCCTCGGAACTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCA
GTTTTACCGGCGCGGTCGAGGACAAACCGGGCCTGTTCCAGGCAGCACAGGGCGGCACATTGTTTCTCGATGAAGTGGCG
GACTTGCCACTGTCGATGCAGGTGAAGCTGCTGCGGGCGATTCAGGAAAAAGCCGTACGCAGTGTCGGCGGTCAGCAGGA
AACCGTGGTCGATGTGCGCATTCTCTGCGCGACGCACAAGGACCTCGACGCAGAAGTCGCCGCCGAGCGCTTTCGTCAGG
ATCTTTATTACCGGCTAAACGTGATCGAATTGCGTGTGCCGCCCCTGCGCGAGCGACGGGATGACATTGAAGTGCTGGCG
GCGCACATGCTTCAGCGCCTGGCCAAAGACACCGGCCAACCAGCGGCATGCCTGCATCTGCACGCTTTGGAGGCTCTGAA
AAACTATCGGTTTCCGGGGAATGTGCGGGAACTGGAGAACGTGCTCGAACGGGCGCATACCTTGTGCGAGAACCGTACGA
TCGAGGCTGAAGATTTGCGCTTGAGCGAGGGCAACTGTGCAGCGGATGGCGCGATTGCCGATCTGACGCAGATCGACAAT
CTGGAGGATTATCTGGAGAACGTCGAACGTAAACTGATTTTGCAGGCGCTGGAGGAGACCCGCTGGAATCGGACTGCGGC
GGCGCAGCGGTTGAGTCTTTCGTTCCGCTCGATGCGTTATCGCCTGAAGAAACTCGGTCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.233	98.884	0.783
pilR	Acinetobacter baumannii strain A118	49.02	100	0.502