Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AB4P92_RS20315 Genome accession   NZ_CP162581
Coordinates   4392236..4393825 (-) Length   529 a.a.
NCBI ID   WP_395598059.1    Uniprot ID   -
Organism   Pseudomonas sp. A0308     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4387236..4398825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P92_RS20300 (AB4P92_20270) - 4389204..4389605 (+) 402 WP_395598058.1 type IV pilin protein -
  AB4P92_RS20305 (AB4P92_20275) thiO 4389663..4390763 (+) 1101 WP_042561133.1 glycine oxidase ThiO -
  AB4P92_RS20310 (AB4P92_20280) pilR 4390893..4392239 (-) 1347 WP_042561132.1 sigma-54 dependent transcriptional regulator Regulator
  AB4P92_RS20315 (AB4P92_20285) pilS 4392236..4393825 (-) 1590 WP_395598059.1 sensor histidine kinase Regulator
  AB4P92_RS20320 (AB4P92_20290) - 4393815..4394048 (-) 234 WP_042561130.1 PP0621 family protein -
  AB4P92_RS20325 (AB4P92_20295) - 4394175..4395191 (-) 1017 WP_042561129.1 outer membrane protein assembly factor BamD -
  AB4P92_RS20330 (AB4P92_20300) rluD 4395343..4396305 (+) 963 WP_042561128.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AB4P92_RS20335 (AB4P92_20305) pgeF 4396302..4397024 (+) 723 WP_395598060.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58599.43 Da        Isoelectric Point: 7.1983

>NTDB_id=1027159 AB4P92_RS20315 WP_395598059.1 4392236..4393825(-) (pilS) [Pseudomonas sp. A0308]
MIAEASHADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRNGSWLYLVLNILLVVFLENTRRPAQLF
SLALVDVLMLCGLFYAAGGVASALGNLLIVSVAISNTLLRRRIGLLIAAIGAIGIVGLSFLLSFSHPLSANEYLQAGTLG
ALCFAASLLVQGLVRRLEVSETLAEQTASKVVGLEALNALILQRMRTGILVLDEQRRVQLANHSAQTLLAQSHLQGHLID
DYSTALVERLQLWLNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLGESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVTESRMQATER
QKIHLRINSGDFATLMDPNQLTQILDNLLRNGWRHSAMLHDHAEVWLALFINPESQLAVLEVQDNGPGVPLDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFNPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1027159 AB4P92_RS20315 WP_395598059.1 4392236..4393825(-) (pilS) [Pseudomonas sp. A0308]
GTGATCGCTGAGGCCTCCCACGCCGACAGCAAACAGGCTCAGCGTCTGCTGCGCCTTTATCATCTTTACCGTTTAAGTGT
CGGCATCACCTTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCA
ACGGCAGCTGGCTGTATCTGGTGCTGAACATTTTGCTGGTGGTGTTCCTGGAGAACACCCGACGCCCCGCGCAATTGTTC
AGCCTGGCGCTGGTCGACGTTCTGATGCTGTGCGGCTTGTTCTACGCGGCTGGCGGCGTGGCCAGTGCGCTCGGCAACTT
GCTGATCGTTTCTGTGGCGATCAGCAATACCTTGCTGCGCCGCCGCATCGGTCTGCTGATCGCCGCCATCGGCGCCATCG
GCATTGTCGGTTTAAGCTTTCTGCTGAGTTTCAGCCATCCCCTGAGCGCCAACGAATACCTGCAGGCCGGCACCCTTGGC
GCGTTGTGTTTTGCCGCGTCGTTGCTGGTGCAGGGGCTGGTCCGGCGGCTGGAGGTCAGCGAAACCCTGGCCGAGCAAAC
CGCCAGCAAAGTGGTCGGTCTGGAGGCTCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGGATCCTGGTGCTCGACG
AACAACGCCGGGTACAGCTGGCCAATCACAGCGCGCAGACCCTGCTCGCGCAATCGCACCTTCAGGGCCATTTGATCGAC
GATTATTCGACCGCCCTGGTCGAACGCCTGCAACTGTGGCTGAACAACCCGACACTGCGCCCACAAAGTCTGAAAATCCC
CGGCAACGGCCTGGAACTGCAGCCAAGCTTCATCGCCCTCGAACAAAGCCCCAATCAGCAAACCCTCGTGTTTCTCGAAG
ACCTCGCGCAGATCGCTCAACAAGCCCAGCAACTGAAACTTGCCGCGCTCGGGCGTTTGACGGCCGGCATTTCCCACGAG
ATTCGCAATCCGCTGGGCGCCATCAGTCATGCCGCGCAGTTGTTGGGGGAGTCCGAGGAACTCGATAGCGCGGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTTATCGAAAACGTCCTGCAACTGTCCCGCCGTCAAC
AGAGCGCTCCACAACGGCTGGACCTCAAGCCGTGGCTGGAAAACTTCGTCACTGAGAGCCGCATGCAGGCTACCGAGCGG
CAGAAGATTCATCTGCGCATCAACTCGGGCGACTTCGCCACCCTGATGGATCCCAACCAGCTCACACAAATTCTCGACAA
TCTTTTACGCAACGGCTGGCGTCACAGCGCCATGCTGCATGATCACGCCGAGGTCTGGCTGGCCCTGTTCATAAACCCCG
AAAGCCAACTGGCGGTACTCGAGGTTCAGGACAACGGCCCCGGCGTACCGCTTGATCAGCAAGCGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAAGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTCAATCCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60

100

0.601

Multiple sequence alignment