Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | AB3N25_RS07350 | Genome accession | NZ_CP162552 |
| Coordinates | 1466317..1467219 (+) | Length | 300 a.a. |
| NCBI ID | WP_218697438.1 | Uniprot ID | A0AAW5LFX6 |
| Organism | Mammaliicoccus sciuri strain MSS74 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1461317..1472219
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3N25_RS07310 (AB3N25_07310) | - | 1461401..1461955 (+) | 555 | WP_096791884.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| AB3N25_RS07315 (AB3N25_07315) | - | 1461956..1463404 (+) | 1449 | WP_096791885.1 | rhomboid family intramembrane serine protease | - |
| AB3N25_RS07320 (AB3N25_07320) | - | 1463409..1463600 (+) | 192 | WP_078099923.1 | YqgQ family protein | - |
| AB3N25_RS07325 (AB3N25_07325) | - | 1463597..1464568 (+) | 972 | WP_218697436.1 | ROK family glucokinase | - |
| AB3N25_RS07330 (AB3N25_07330) | - | 1464568..1464882 (+) | 315 | WP_058611614.1 | MTH1187 family thiamine-binding protein | - |
| AB3N25_RS07335 (AB3N25_07335) | - | 1464912..1465151 (-) | 240 | WP_016911885.1 | DUF2759 domain-containing protein | - |
| AB3N25_RS07340 (AB3N25_07340) | - | 1465249..1465881 (+) | 633 | WP_058611613.1 | MBL fold metallo-hydrolase | - |
| AB3N25_RS07345 (AB3N25_07345) | - | 1465915..1466163 (-) | 249 | WP_025904960.1 | DUF2626 family protein | - |
| AB3N25_RS07350 (AB3N25_07350) | comGA | 1466317..1467219 (+) | 903 | WP_218697438.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AB3N25_RS07355 (AB3N25_07355) | comGB | 1467209..1468249 (+) | 1041 | WP_196968298.1 | competence type IV pilus assembly protein ComGB | - |
| AB3N25_RS07360 (AB3N25_07360) | comGC | 1468264..1468581 (+) | 318 | WP_058611611.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AB3N25_RS07365 (AB3N25_07365) | comGD | 1468562..1469008 (+) | 447 | WP_404803430.1 | competence type IV pilus minor pilin ComGD | - |
| AB3N25_RS07370 (AB3N25_07370) | comGE | 1468992..1469273 (+) | 282 | WP_404803431.1 | competence type IV pilus minor pilin ComGE | - |
| AB3N25_RS07375 (AB3N25_07375) | - | 1469248..1469682 (+) | 435 | WP_196968296.1 | competence type IV pilus minor pilin ComGF | - |
| AB3N25_RS07380 (AB3N25_07380) | - | 1469917..1470405 (+) | 489 | WP_196968295.1 | shikimate kinase | - |
| AB3N25_RS07385 (AB3N25_07385) | gcvT | 1470598..1471686 (+) | 1089 | WP_196968294.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 300 a.a. Molecular weight: 34387.26 Da Isoelectric Point: 6.1198
>NTDB_id=1027117 AB3N25_RS07350 WP_218697438.1 1466317..1467219(+) (comGA) [Mammaliicoccus sciuri strain MSS74]
MEKLFKSIINDAINSNASDIHFVPLNDDKVFVQVRINGDNIPYDLDLDFNLYSRLLIYMKFIAHLDVSERNKAQSGQYLF
EHDIHYYLRISTIPISLGIESSSIRITPQHFNHSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKAILRCDPDVIMIGEIRDDITAKQVIQASLSGHLVLSTMHASD
TIGAIHRLVELGVTVEQIKQGISCITNQRLVKKCDEARTLDMSYIFKDDIIKYMENDYET
MEKLFKSIINDAINSNASDIHFVPLNDDKVFVQVRINGDNIPYDLDLDFNLYSRLLIYMKFIAHLDVSERNKAQSGQYLF
EHDIHYYLRISTIPISLGIESSSIRITPQHFNHSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKAILRCDPDVIMIGEIRDDITAKQVIQASLSGHLVLSTMHASD
TIGAIHRLVELGVTVEQIKQGISCITNQRLVKKCDEARTLDMSYIFKDDIIKYMENDYET
Nucleotide
Download Length: 903 bp
>NTDB_id=1027117 AB3N25_RS07350 WP_218697438.1 1466317..1467219(+) (comGA) [Mammaliicoccus sciuri strain MSS74]
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTATCAATTCTAATGCGAGTGATATTCACTTTGTACCTTTAAACGA
TGATAAAGTCTTTGTCCAAGTGAGGATAAATGGCGATAATATACCTTATGATTTAGATTTAGATTTTAATTTGTATAGTA
GGCTACTTATTTATATGAAATTTATCGCTCATCTAGATGTAAGTGAACGAAATAAAGCACAAAGTGGTCAATATTTATTT
GAACATGACATACATTACTATTTAAGAATTTCCACGATACCTATCAGTTTAGGGATAGAATCTAGTTCCATTAGAATAAC
CCCTCAACATTTTAATCATTCACAAGTGAAATCAGAGCATCAATCATATAACGTTCTACAAAACAGAATGTATCAATCAG
AAGGGCTATTTTTATTTACGGGTCCAACTGGATCAGGTAAGACTACATTAATGTATGAACTTATGTACGCATTAAAGAGA
GAGAAGAATAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAAGCCATTTTAAGATGTGATCCGGACGTTATTATGATTGGAGAGATAA
GAGATGATATTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCATGCGAGTGAT
ACAATCGGGGCAATCCACCGACTAGTTGAGCTAGGTGTAACAGTCGAACAAATTAAACAAGGTATTTCATGTATTACGAA
CCAACGTCTTGTGAAGAAATGTGATGAAGCAAGAACATTAGATATGTCCTATATTTTTAAAGATGACATTATTAAATATA
TGGAGAATGATTATGAAACGTAA
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTATCAATTCTAATGCGAGTGATATTCACTTTGTACCTTTAAACGA
TGATAAAGTCTTTGTCCAAGTGAGGATAAATGGCGATAATATACCTTATGATTTAGATTTAGATTTTAATTTGTATAGTA
GGCTACTTATTTATATGAAATTTATCGCTCATCTAGATGTAAGTGAACGAAATAAAGCACAAAGTGGTCAATATTTATTT
GAACATGACATACATTACTATTTAAGAATTTCCACGATACCTATCAGTTTAGGGATAGAATCTAGTTCCATTAGAATAAC
CCCTCAACATTTTAATCATTCACAAGTGAAATCAGAGCATCAATCATATAACGTTCTACAAAACAGAATGTATCAATCAG
AAGGGCTATTTTTATTTACGGGTCCAACTGGATCAGGTAAGACTACATTAATGTATGAACTTATGTACGCATTAAAGAGA
GAGAAGAATAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAAGCCATTTTAAGATGTGATCCGGACGTTATTATGATTGGAGAGATAA
GAGATGATATTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCATGCGAGTGAT
ACAATCGGGGCAATCCACCGACTAGTTGAGCTAGGTGTAACAGTCGAACAAATTAAACAAGGTATTTCATGTATTACGAA
CCAACGTCTTGTGAAGAAATGTGATGAAGCAAGAACATTAGATATGTCCTATATTTTTAAAGATGACATTATTAAATATA
TGGAGAATGATTATGAAACGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
52.5 |
93.333 |
0.49 |
| comGA | Staphylococcus aureus N315 |
52.5 |
93.333 |
0.49 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
40.58 |
92 |
0.373 |
| pilB | Haemophilus influenzae Rd KW20 |
35.032 |
100 |
0.367 |