Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB3473_RS12820 Genome accession   NZ_CP162537
Coordinates   2586255..2586788 (-) Length   177 a.a.
NCBI ID   WP_002506087.1    Uniprot ID   -
Organism   Staphylococcus equorum strain UPB 1351     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2581255..2591788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3473_RS12790 (AB3473_12790) celB 2581369..2582663 (-) 1295 Protein_2470 PTS cellobiose transporter subunit IIC -
  AB3473_RS12795 (AB3473_12795) - 2582673..2582987 (-) 315 WP_398574119.1 PTS sugar transporter subunit IIB -
  AB3473_RS12800 (AB3473_12800) - 2583587..2583790 (+) 204 WP_069828024.1 hypothetical protein -
  AB3473_RS12805 (AB3473_12805) - 2583959..2585260 (-) 1302 WP_398574120.1 LysM peptidoglycan-binding domain-containing protein -
  AB3473_RS12810 (AB3473_12810) - 2585477..2585665 (-) 189 WP_021339624.1 hypothetical protein -
  AB3473_RS12815 (AB3473_12815) rpsR 2585961..2586203 (-) 243 WP_002506086.1 30S ribosomal protein S18 -
  AB3473_RS12820 (AB3473_12820) ssbA 2586255..2586788 (-) 534 WP_002506087.1 single-stranded DNA-binding protein Machinery gene
  AB3473_RS12825 (AB3473_12825) rpsF 2586808..2587113 (-) 306 WP_002511967.1 30S ribosomal protein S6 -
  AB3473_RS12830 (AB3473_12830) - 2587516..2588310 (+) 795 WP_002506089.1 GH25 family lysozyme -
  AB3473_RS12835 (AB3473_12835) ychF 2589199..2590296 (-) 1098 WP_002506090.1 redox-regulated ATPase YchF -
  AB3473_RS12840 (AB3473_12840) - 2590296..2590511 (-) 216 WP_002506091.1 DUF951 domain-containing protein -
  AB3473_RS12845 (AB3473_12845) - 2590533..2591417 (-) 885 WP_002506092.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19851.40 Da        Isoelectric Point: 5.2149

>NTDB_id=1027038 AB3473_RS12820 WP_002506087.1 2586255..2586788(-) (ssbA) [Staphylococcus equorum strain UPB 1351]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHAQEGNNNFQNFGGQQSGQNTSSYQNNNQNNNNNYNNNSSNKNNQSDNP
FANANGPIDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1027038 AB3473_RS12820 WP_002506087.1 2586255..2586788(-) (ssbA) [Staphylococcus equorum strain UPB 1351]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTCGTTT
TTAGAAAACAAGCAGATAATGTTAATAACTACTTATTCAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTACGAAAACCAAGAAGGTCGTCGTATATTTGTAACTGAAGTGGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CCAAAACCAACGTCATGCCCAAGAAGGAAATAACAATTTCCAAAACTTTGGCGGACAACAATCAGGTCAAAATACGTCAT
CTTATCAGAACAATAACCAAAACAACAACAATAATTATAACAACAATTCATCAAACAAAAATAATCAATCGGATAATCCA
TTTGCAAATGCAAACGGACCAATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.582

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

52.809

100

0.531
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

62.147

0.362

Multiple sequence alignment