Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB3470_RS19325 Genome accession   NZ_CP162517
Coordinates   3646414..3647103 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain BF12B1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3641414..3652103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3470_RS19290 (AB3470_19280) flgN 3641594..3642076 (-) 483 WP_014481048.1 flagellar protein FlgN -
  AB3470_RS19295 (AB3470_19285) flgM 3642092..3642358 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB3470_RS19300 (AB3470_19290) yvyF 3642439..3642858 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  AB3470_RS19305 (AB3470_19295) comFC 3642932..3643654 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  AB3470_RS19310 (AB3470_19300) comFB 3643618..3643914 (-) 297 WP_015483764.1 late competence protein ComFB -
  AB3470_RS19315 (AB3470_19305) comFA 3643974..3645365 (-) 1392 WP_140600026.1 ATP-dependent helicase ComFA Machinery gene
  AB3470_RS19320 (AB3470_19310) fakBA 3645471..3646316 (-) 846 WP_003244125.1 DegV family protein -
  AB3470_RS19325 (AB3470_19315) degU 3646414..3647103 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB3470_RS19330 (AB3470_19320) degS 3647186..3648343 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  AB3470_RS19335 (AB3470_19325) yvyE 3648560..3649213 (+) 654 WP_003227979.1 YigZ family protein -
  AB3470_RS19340 (AB3470_19330) tagV 3649213..3650388 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  AB3470_RS19345 (AB3470_19335) tagO 3650461..3651537 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1026802 AB3470_RS19325 WP_003219701.1 3646414..3647103(-) (degU) [Bacillus subtilis strain BF12B1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1026802 AB3470_RS19325 WP_003219701.1 3646414..3647103(-) (degU) [Bacillus subtilis strain BF12B1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment