Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB3470_RS19315 Genome accession   NZ_CP162517
Coordinates   3643974..3645365 (-) Length   463 a.a.
NCBI ID   WP_140600026.1    Uniprot ID   -
Organism   Bacillus subtilis strain BF12B1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3638974..3650365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3470_RS19280 (AB3470_19270) flgL 3639145..3640041 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  AB3470_RS19285 (AB3470_19275) flgK 3640052..3641575 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  AB3470_RS19290 (AB3470_19280) flgN 3641594..3642076 (-) 483 WP_014481048.1 flagellar protein FlgN -
  AB3470_RS19295 (AB3470_19285) flgM 3642092..3642358 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB3470_RS19300 (AB3470_19290) yvyF 3642439..3642858 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  AB3470_RS19305 (AB3470_19295) comFC 3642932..3643654 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  AB3470_RS19310 (AB3470_19300) comFB 3643618..3643914 (-) 297 WP_015483764.1 late competence protein ComFB -
  AB3470_RS19315 (AB3470_19305) comFA 3643974..3645365 (-) 1392 WP_140600026.1 ATP-dependent helicase ComFA Machinery gene
  AB3470_RS19320 (AB3470_19310) fakBA 3645471..3646316 (-) 846 WP_003244125.1 DegV family protein -
  AB3470_RS19325 (AB3470_19315) degU 3646414..3647103 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB3470_RS19330 (AB3470_19320) degS 3647186..3648343 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  AB3470_RS19335 (AB3470_19325) yvyE 3648560..3649213 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52564.69 Da        Isoelectric Point: 10.0988

>NTDB_id=1026801 AB3470_RS19315 WP_140600026.1 3643974..3645365(-) (comFA) [Bacillus subtilis strain BF12B1]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNKLAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1026801 AB3470_RS19315 WP_140600026.1 3643974..3645365(-) (comFA) [Bacillus subtilis strain BF12B1]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATA
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.784

100

0.998

Multiple sequence alignment