Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB3470_RS19305 Genome accession   NZ_CP162517
Coordinates   3642932..3643654 (-) Length   240 a.a.
NCBI ID   WP_029725992.1    Uniprot ID   -
Organism   Bacillus subtilis strain BF12B1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3637932..3648654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3470_RS19270 (AB3470_19260) fliW 3638071..3638502 (-) 432 WP_029725990.1 flagellar assembly protein FliW -
  AB3470_RS19275 (AB3470_19265) yviE 3638523..3639098 (-) 576 WP_014481045.1 DUF6470 family protein -
  AB3470_RS19280 (AB3470_19270) flgL 3639145..3640041 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  AB3470_RS19285 (AB3470_19275) flgK 3640052..3641575 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  AB3470_RS19290 (AB3470_19280) flgN 3641594..3642076 (-) 483 WP_014481048.1 flagellar protein FlgN -
  AB3470_RS19295 (AB3470_19285) flgM 3642092..3642358 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB3470_RS19300 (AB3470_19290) yvyF 3642439..3642858 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  AB3470_RS19305 (AB3470_19295) comFC 3642932..3643654 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  AB3470_RS19310 (AB3470_19300) comFB 3643618..3643914 (-) 297 WP_015483764.1 late competence protein ComFB -
  AB3470_RS19315 (AB3470_19305) comFA 3643974..3645365 (-) 1392 WP_140600026.1 ATP-dependent helicase ComFA Machinery gene
  AB3470_RS19320 (AB3470_19310) fakBA 3645471..3646316 (-) 846 WP_003244125.1 DegV family protein -
  AB3470_RS19325 (AB3470_19315) degU 3646414..3647103 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB3470_RS19330 (AB3470_19320) degS 3647186..3648343 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27433.73 Da        Isoelectric Point: 9.4913

>NTDB_id=1026800 AB3470_RS19305 WP_029725992.1 3642932..3643654(-) (comFC) [Bacillus subtilis strain BF12B1]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1026800 AB3470_RS19305 WP_029725992.1 3642932..3643654(-) (comFC) [Bacillus subtilis strain BF12B1]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTATC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGTG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983

Multiple sequence alignment