Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   AB0764_RS24250 Genome accession   NZ_CP162497
Coordinates   4622454..4622816 (-) Length   120 a.a.
NCBI ID   WP_014457774.1    Uniprot ID   A0A8D3WU46
Organism   Priestia megaterium strain 10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4617943..4630364 4622454..4622816 within 0


Gene organization within MGE regions


Location: 4617943..4630364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0764_RS24240 (AB0764_24235) - 4617943..4620573 (+) 2631 WP_115655074.1 DEAD/DEAH box helicase -
  AB0764_RS24245 (AB0764_24240) - 4620871..4621917 (+) 1047 WP_014457775.1 LysM peptidoglycan-binding domain-containing protein -
  AB0764_RS24250 (AB0764_24245) ssbB 4622454..4622816 (-) 363 WP_014457774.1 single-stranded DNA-binding protein Machinery gene
  AB0764_RS24255 (AB0764_24250) - 4622913..4623350 (+) 438 WP_014457773.1 YwpF-like family protein -
  AB0764_RS24260 (AB0764_24255) - 4623874..4624296 (+) 423 WP_014457772.1 helix-turn-helix domain-containing protein -
  AB0764_RS24265 (AB0764_24260) fabZ 4624325..4624759 (-) 435 WP_371906259.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AB0764_RS24270 (AB0764_24265) - 4624843..4625664 (-) 822 WP_140451795.1 flagellar hook-basal body protein -
  AB0764_RS24275 (AB0764_24270) - 4625688..4626512 (-) 825 WP_014457769.1 flagellar hook-basal body protein -
  AB0764_RS24280 (AB0764_24275) - 4626623..4627624 (-) 1002 WP_013059791.1 rod shape-determining protein -
  AB0764_RS24285 (AB0764_24280) spoIIID 4627811..4628074 (-) 264 WP_013059792.1 sporulation transcriptional regulator SpoIIID -
  AB0764_RS24290 (AB0764_24285) - 4628350..4629180 (-) 831 WP_014457768.1 M23 family metallopeptidase -
  AB0764_RS24295 (AB0764_24290) spoIID 4629342..4630364 (-) 1023 WP_406866597.1 stage II sporulation protein D -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13412.09 Da        Isoelectric Point: 7.1647

>NTDB_id=1026597 AB0764_RS24250 WP_014457774.1 4622454..4622816(-) (ssbB) [Priestia megaterium strain 10]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGSSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=1026597 AB0764_RS24250 WP_014457774.1 4622454..4622816(-) (ssbB) [Priestia megaterium strain 10]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTCTTCTTCATTTGATTCAAATCAGCAAGAAGAATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508

Multiple sequence alignment