Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | AB4J90_RS13565 | Genome accession | NZ_CP162496 |
| Coordinates | 2658269..2658565 (-) | Length | 98 a.a. |
| NCBI ID | WP_011887800.1 | Uniprot ID | A4IQW3 |
| Organism | Geobacillus thermodenitrificans strain BIM B-1973 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2653269..2663565
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB4J90_RS13530 (AB4J90_13530) | - | 2653840..2655504 (+) | 1665 | WP_011887795.1 | DEAD/DEAH box helicase | - |
| AB4J90_RS13535 (AB4J90_13535) | - | 2655491..2656285 (+) | 795 | WP_011887796.1 | YqhG family protein | - |
| AB4J90_RS13540 (AB4J90_13540) | - | 2656362..2656541 (-) | 180 | WP_008879845.1 | YqzE family protein | - |
| AB4J90_RS13545 (AB4J90_13545) | comGG | 2656587..2656976 (-) | 390 | WP_008879846.1 | competence type IV pilus minor pilin ComGG | - |
| AB4J90_RS13550 (AB4J90_13550) | comGF | 2657110..2657595 (-) | 486 | WP_011887798.1 | competence type IV pilus minor pilin ComGF | - |
| AB4J90_RS13555 (AB4J90_13555) | - | 2657532..2657858 (-) | 327 | WP_011887799.1 | hypothetical protein | - |
| AB4J90_RS13560 (AB4J90_13560) | comGD | 2657842..2658279 (-) | 438 | WP_008879849.1 | competence type IV pilus minor pilin ComGD | - |
| AB4J90_RS13565 (AB4J90_13565) | comGC | 2658269..2658565 (-) | 297 | WP_011887800.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AB4J90_RS13570 (AB4J90_13570) | comGB | 2658633..2659661 (-) | 1029 | WP_011887801.1 | competence type IV pilus assembly protein ComGB | - |
| AB4J90_RS13575 (AB4J90_13575) | comGA | 2659658..2660728 (-) | 1071 | WP_029760727.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AB4J90_RS13580 (AB4J90_13580) | - | 2660928..2661626 (+) | 699 | WP_029760726.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| AB4J90_RS13585 (AB4J90_13585) | - | 2661790..2662032 (+) | 243 | WP_008879854.1 | DUF2626 family protein | - |
| AB4J90_RS13590 (AB4J90_13590) | - | 2662063..2663190 (-) | 1128 | WP_011887804.1 | class I SAM-dependent methyltransferase | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 10855.74 Da Isoelectric Point: 6.2096
>NTDB_id=1026528 AB4J90_RS13565 WP_011887800.1 2658269..2658565(-) (comGC) [Geobacillus thermodenitrificans strain BIM B-1973]
MNEKGFTLIEMLIVLMVISVLLLVAIPNITKHNGMINDKGCEAFLSMVQAQVKAYEMEHNKIPTVQQLLDGRYIKSDKCP
NGHAIKINENGDVSEIGS
MNEKGFTLIEMLIVLMVISVLLLVAIPNITKHNGMINDKGCEAFLSMVQAQVKAYEMEHNKIPTVQQLLDGRYIKSDKCP
NGHAIKINENGDVSEIGS
Nucleotide
Download Length: 297 bp
>NTDB_id=1026528 AB4J90_RS13565 WP_011887800.1 2658269..2658565(-) (comGC) [Geobacillus thermodenitrificans strain BIM B-1973]
ATGAACGAAAAAGGGTTTACACTTATTGAAATGCTCATTGTGTTAATGGTCATTTCAGTGTTGCTGTTAGTTGCGATTCC
AAACATCACAAAGCATAACGGCATGATTAACGACAAAGGATGTGAGGCGTTTTTGAGCATGGTACAGGCGCAAGTGAAGG
CATATGAGATGGAGCATAACAAAATTCCAACCGTTCAACAATTGCTTGATGGCCGTTATATTAAATCGGACAAATGCCCG
AACGGTCATGCGATCAAAATTAACGAGAATGGCGATGTGAGCGAAATTGGCTCGTAA
ATGAACGAAAAAGGGTTTACACTTATTGAAATGCTCATTGTGTTAATGGTCATTTCAGTGTTGCTGTTAGTTGCGATTCC
AAACATCACAAAGCATAACGGCATGATTAACGACAAAGGATGTGAGGCGTTTTTGAGCATGGTACAGGCGCAAGTGAAGG
CATATGAGATGGAGCATAACAAAATTCCAACCGTTCAACAATTGCTTGATGGCCGTTATATTAAATCGGACAAATGCCCG
AACGGTCATGCGATCAAAATTAACGAGAATGGCGATGTGAGCGAAATTGGCTCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
55.172 |
88.776 |
0.49 |
| comGC | Staphylococcus aureus MW2 |
41.935 |
94.898 |
0.398 |
| comGC | Staphylococcus aureus N315 |
41.935 |
94.898 |
0.398 |