Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DQM71_RS16215 Genome accession   NZ_LS483472
Coordinates   3331912..3332322 (-) Length   136 a.a.
NCBI ID   WP_001200131.1    Uniprot ID   A0A0D5YKX4
Organism   Acinetobacter baumannii strain NCTC13421     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3326912..3337322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM71_RS16185 (NCTC13421_03232) - 3326998..3327267 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  DQM71_RS16190 (NCTC13421_03233) rapZ 3327264..3328115 (-) 852 WP_000821671.1 RNase adapter RapZ -
  DQM71_RS16195 (NCTC13421_03234) panC 3328138..3328986 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  DQM71_RS16200 (NCTC13421_03235) panB 3328990..3329799 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  DQM71_RS16205 (NCTC13421_03236) folK 3329845..3330327 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DQM71_RS16210 (NCTC13421_03237) pcnB 3330324..3331787 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  DQM71_RS16215 (NCTC13421_03238) comEA 3331912..3332322 (-) 411 WP_001200131.1 ComEA family DNA-binding protein Machinery gene
  DQM71_RS16220 (NCTC13421_03239) mazG 3332291..3333097 (-) 807 WP_000359493.1 nucleoside triphosphate pyrophosphohydrolase -
  DQM71_RS16225 (NCTC13421_03240) - 3333209..3333982 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  DQM71_RS16230 (NCTC13421_03241) - 3334027..3336333 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15650.89 Da        Isoelectric Point: 10.3828

>NTDB_id=1025673 DQM71_RS16215 WP_001200131.1 3331912..3332322(-) (comEA) [Acinetobacter baumannii strain NCTC13421]
MQYSIRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1025673 DQM71_RS16215 WP_001200131.1 3331912..3332322(-) (comEA) [Acinetobacter baumannii strain NCTC13421]
ATGCAATACAGCATAAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5YKX4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404