Detailed information NTG1025507

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: AB3443_RS02635
• Genome accession: NZ_CP162437
• Coordinates: 505869..506315 (+)
• Length: 148 a.a.
• NCBI ID: WP_001790850.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain TUM22698
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	507019..508191	505869..506315	flank	704

Gene organization within MGE regions

Location: 505869..508191

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3443_RS02635 (AB3443_02635)	comGD	505869..506315 (+)	447	WP_001790850.1	competence type IV pilus minor pilin ComGD	Machinery gene
AB3443_RS02640 (AB3443_02640)	comGE	506302..506601 (+)	300	WP_000844413.1	hypothetical protein	Machinery gene
AB3443_RS02645 (AB3443_02645)	comGF	506519..506941 (+)	423	WP_258922346.1	competence type IV pilus minor pilin ComGF	Machinery gene
AB3443_RS02650 (AB3443_02650)	-	507019..508191 (+)	1173	WP_000195429.1	IS256-like element IS256 family transposase	-

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17213.42 Da
• Isoelectric Point: 10.3682

>NTDB_id=1025507 AB3443_RS02635 WP_001790850.1 505869..506315(+) (comGD) [Staphylococcus aureus strain TUM22698]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide

• Length: 447 bp

>NTDB_id=1025507 AB3443_RS02635 WP_001790850.1 505869..506315(+) (comGD) [Staphylococcus aureus strain TUM22698]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Staphylococcus aureus MW2	99.324	100	0.993
comGD	Staphylococcus aureus N315	99.324	100	0.993