Detailed information NTG1025509

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: AB3443_RS02645
• Genome accession: NZ_CP162437
• Coordinates: 506519..506941 (+)
• Length: 140 a.a.
• NCBI ID: WP_258922346.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain TUM22698
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	507019..508191	506519..506941	flank	78

Gene organization within MGE regions

Location: 506519..508191

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3443_RS02645 (AB3443_02645)	comGF	506519..506941 (+)	423	WP_258922346.1	competence type IV pilus minor pilin ComGF	Machinery gene
AB3443_RS02650 (AB3443_02650)	-	507019..508191 (+)	1173	WP_000195429.1	IS256-like element IS256 family transposase	-

Sequence

Protein

• Length: 140 a.a.
• Molecular weight: 16413.66 Da
• Isoelectric Point: 10.0943

>NTDB_id=1025509 AB3443_RS02645 WP_258922346.1 506519..506941(+) (comGF) [Staphylococcus aureus strain TUM22698]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVDKVRIIV

Nucleotide

• Length: 423 bp

>NTDB_id=1025509 AB3443_RS02645 WP_258922346.1 506519..506941(+) (comGF) [Staphylococcus aureus strain TUM22698]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTTGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTG
ATAAAGTCCGTATAATTGTGTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (66-138)

• Prokaryotic N-terminal methylation motif (N_methyl) (28-51)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Staphylococcus aureus MW2	100	95	0.95
comGF	Staphylococcus aureus N315	96.241	95	0.914