Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   AB3443_RS02640 Genome accession   NZ_CP162437
Coordinates   506302..506601 (+) Length   99 a.a.
NCBI ID   WP_000844413.1    Uniprot ID   X5E258
Organism   Staphylococcus aureus strain TUM22698     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 507019..508191 506302..506601 flank 418


Gene organization within MGE regions


Location: 506302..508191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3443_RS02640 (AB3443_02640) comGE 506302..506601 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  AB3443_RS02645 (AB3443_02645) comGF 506519..506941 (+) 423 WP_258922346.1 competence type IV pilus minor pilin ComGF Machinery gene
  AB3443_RS02650 (AB3443_02650) - 507019..508191 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11093.20 Da        Isoelectric Point: 9.9215

>NTDB_id=1025508 AB3443_RS02640 WP_000844413.1 506302..506601(+) (comGE) [Staphylococcus aureus strain TUM22698]
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=1025508 AB3443_RS02640 WP_000844413.1 506302..506601(+) (comGE) [Staphylococcus aureus strain TUM22698]
ATGAAAAGCTATAAGTGTAAAGGTTCATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAGTATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5E258

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus MW2

86.842

100

1
  comGE Staphylococcus aureus N315

98.99

100

0.99

Multiple sequence alignment