Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DQN45_RS00205 Genome accession   NZ_LS483438
Coordinates   43663..44328 (+) Length   221 a.a.
NCBI ID   WP_013526173.1    Uniprot ID   Q4QLV5
Organism   Haemophilus influenzae strain NCTC12975     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 38663..49328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN45_RS00180 (NCTC12975_00036) crp 40203..40877 (-) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator
  DQN45_RS00185 (NCTC12975_00037) - 40862..41113 (-) 252 WP_005647999.1 YheU family protein -
  DQN45_RS00190 (NCTC12975_00038) slmA 41135..41791 (-) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  DQN45_RS00195 (NCTC12975_00039) dut 41795..42250 (-) 456 WP_005631431.1 dUTP diphosphatase -
  DQN45_RS00200 (NCTC12975_00040) coaBC 42298..43500 (-) 1203 WP_011272308.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  DQN45_RS00205 (NCTC12975_00041) radC 43663..44328 (+) 666 WP_013526173.1 DNA repair protein RadC Machinery gene
  DQN45_RS00210 (NCTC12975_00042) rpmB 44542..44778 (+) 237 WP_005542826.1 50S ribosomal protein L28 -
  DQN45_RS00215 (NCTC12975_00043) rpmG 44790..44960 (+) 171 WP_005613503.1 50S ribosomal protein L33 -
  DQN45_RS00220 (NCTC12975_00044) - 45307..46671 (+) 1365 WP_042593722.1 diaminobutyrate--2-oxoglutarate transaminase -
  DQN45_RS00225 (NCTC12975_00045) vapB2 46818..47051 (+) 234 WP_005648011.1 type II toxin-antitoxin system antitoxin VapB2 -
  DQN45_RS00230 (NCTC12975_00046) vapC 47051..47449 (+) 399 WP_005651560.1 tRNA(fMet)-specific endonuclease VapC -
  DQN45_RS00235 (NCTC12975_00047) ddc 47469..49004 (+) 1536 WP_011272306.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25057.34 Da        Isoelectric Point: 6.3797

>NTDB_id=1024871 DQN45_RS00205 WP_013526173.1 43663..44328(+) (radC) [Haemophilus influenzae strain NCTC12975]
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKDCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQEMLSTPIINDLETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1024871 DQN45_RS00205 WP_013526173.1 43663..44328(+) (radC) [Haemophilus influenzae strain NCTC12975]
ATGGAAAACAATGATGAATTAATGCCACGGGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGATTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCCGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGAGATGTTAAGTACGCCGATTATTAATGATCTTGAAACGGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATGGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAACTTATTAC
TAAAAAAATTCAAGATGCGGCTGAACTAATGGAAATTCGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(102-218)

UPF0758 N-terminal (UPF0758_N)

(8-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QLV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

97.738

100

0.977
  radC Streptococcus pneumoniae TIGR4

38.14

97.285

0.371
  radC Streptococcus pneumoniae R6

37.674

97.285

0.367
  radC Streptococcus pneumoniae D39

37.674

97.285

0.367