Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DQN42_RS09000 Genome accession   NZ_LS483436
Coordinates   1815975..1816565 (-) Length   196 a.a.
NCBI ID   WP_003077156.1    Uniprot ID   -
Organism   Streptococcus intermedius strain NCTC11324     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1810975..1821565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN42_RS09890 - 1814353..1814674 (+) 322 Protein_1723 transposase -
  DQN42_RS08990 (NCTC11324_01813) - 1814747..1815405 (-) 659 Protein_1724 lysostaphin resistance A-like protein -
  DQN42_RS08995 (NCTC11324_01814) - 1815410..1815964 (-) 555 WP_003077403.1 DNA-3-methyladenine glycosylase I -
  DQN42_RS09000 (NCTC11324_01815) ruvA 1815975..1816565 (-) 591 WP_003077156.1 Holliday junction branch migration protein RuvA Machinery gene
  DQN42_RS09005 (NCTC11324_01816) - 1816735..1817241 (+) 507 WP_037589496.1 helix-turn-helix domain-containing protein -
  DQN42_RS09010 (NCTC11324_01817) - 1817225..1817734 (+) 510 WP_003077229.1 RDD family protein -
  DQN42_RS09015 (NCTC11324_01818) hexB 1817880..1819826 (-) 1947 WP_003077366.1 DNA mismatch repair endonuclease MutL Machinery gene
  DQN42_RS09020 (NCTC11324_01819) - 1819922..1821067 (-) 1146 WP_003077372.1 site-specific integrase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21601.03 Da        Isoelectric Point: 5.6978

>NTDB_id=1024761 DQN42_RS09000 WP_003077156.1 1815975..1816565(-) (ruvA) [Streptococcus intermedius strain NCTC11324]
MYEYLKGIITKITAKYIVLEVNAIGYILHVANPYAYSGHLHQEAKVYVHQVVREDAELLYGFSTEEEKQLFLSLISVSGI
GPVSALAIIAADDNTGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVAADGPAESKAPVQTVDNQELEEAMEAML
ALGYKAAELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1024761 DQN42_RS09000 WP_003077156.1 1815975..1816565(-) (ruvA) [Streptococcus intermedius strain NCTC11324]
ATGTACGAATATTTAAAAGGAATTATTACCAAAATCACAGCTAAATACATTGTTTTGGAAGTCAATGCTATTGGGTACAT
ACTTCACGTGGCCAACCCCTATGCTTACTCAGGTCATCTTCATCAGGAAGCCAAGGTCTATGTGCACCAGGTGGTGAGAG
AAGACGCGGAGCTTCTATATGGTTTTTCGACTGAGGAGGAGAAGCAACTCTTTCTCAGCTTGATTTCAGTCTCAGGTATT
GGTCCTGTGTCTGCTTTGGCTATTATTGCTGCAGATGATAATACTGGCTTAGTGCAAGCCATTGAGCAGAAAAACATCAC
CTACCTGACCAAGTTTCCTAAGATTGGCAAGAAGACAGCCCAACAGATGGTACTGGACTTAGAAGGCAAAGTAGTGGCTG
CAGATGGTCCGGCAGAAAGCAAGGCGCCCGTTCAGACTGTGGATAATCAGGAGCTGGAGGAAGCCATGGAAGCCATGCTG
GCTCTGGGATACAAGGCTGCTGAACTTAAGAAAATCAAGAAATTCTTTGAAGGCACAACTGATACAGCTGAAAATTATAT
CAAGTCAGCTCTCAAGATGTTGGTGAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

85.279

100

0.857
  ruvA Streptococcus pneumoniae R6

85.279

100

0.857
  ruvA Streptococcus pneumoniae D39

85.279

100

0.857
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.827

100

0.444