Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB1F57_RS11875 Genome accession   NZ_CP162268
Coordinates   2344592..2345086 (-) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus sp. ZY1909104     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2334383..2344082 2344592..2345086 flank 510


Gene organization within MGE regions


Location: 2334383..2345086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS11840 (AB1F57_11840) - 2334383..2335471 (-) 1089 WP_367985779.1 hypothetical protein -
  AB1F57_RS11845 (AB1F57_11845) - 2335529..2338429 (-) 2901 WP_367985780.1 G5 domain-containing protein -
  AB1F57_RS11850 (AB1F57_11850) - 2338568..2338741 (+) 174 WP_002942417.1 YlcI/YnfO family protein -
  AB1F57_RS11855 (AB1F57_11855) uvrA 2338771..2341596 (-) 2826 WP_367985781.1 excinuclease ABC subunit UvrA -
  AB1F57_RS11860 (AB1F57_11860) - 2342460..2343404 (+) 945 WP_105137698.1 magnesium transporter CorA family protein -
  AB1F57_RS11865 (AB1F57_11865) - 2343420..2344082 (+) 663 WP_367985782.1 DUF1129 domain-containing protein -
  AB1F57_RS11870 (AB1F57_11870) rpsR 2344320..2344559 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  AB1F57_RS11875 (AB1F57_11875) ssbA 2344592..2345086 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=1024712 AB1F57_RS11875 WP_002942409.1 2344592..2345086(-) (ssbA) [Streptococcus sp. ZY1909104]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1024712 AB1F57_RS11875 WP_002942409.1 2344592..2345086(-) (ssbA) [Streptococcus sp. ZY1909104]
ATGATAAATAATGTAGTATTGGTTGGTCGCATGACCCGCGATGCAGAACTTCGTTACACTCCGTCAAACCAAGCTGTTGC
GACTTTTACACTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGCGAGCGTGAAGCGGACTTTATCAACGTAGTTATCT
GGCGTCAACAAGCTGAAAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTCATTGGCGTGACTGGTCGCATTCAGACCCGT
AGTTACGACAATCAGCAAGGGCAACGCGTTTATGTAACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGCGGATATTCTGCTGGCAATTCATTTGCTGGTGGCAATGATTACAATTCACCTTATCAAG
CACCTGCACAATCTACACCGAACTTCGCTCGAGAAGAAAGTCCATTTGGTGCATCAAACCCAATGGATATTTCAGACGAT
GACCTACCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment