Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   AB1F57_RS05010 Genome accession   NZ_CP162268
Coordinates   991298..992299 (+) Length   333 a.a.
NCBI ID   WP_280921716.1    Uniprot ID   -
Organism   Streptococcus sp. ZY1909104     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 992536..1031501 991298..992299 flank 237


Gene organization within MGE regions


Location: 991298..1031501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS05010 (AB1F57_05010) ccpA 991298..992299 (+) 1002 WP_280921716.1 catabolite control protein A Regulator
  AB1F57_RS05015 (AB1F57_05015) - 992536..993210 (+) 675 WP_105160575.1 hydrolase -
  AB1F57_RS05025 (AB1F57_05025) - 993419..994507 (-) 1089 WP_367986181.1 tyrosine-type recombinase/integrase -
  AB1F57_RS05030 (AB1F57_05030) - 994629..995159 (-) 531 WP_367986182.1 hypothetical protein -
  AB1F57_RS05035 (AB1F57_05035) - 995182..995568 (-) 387 WP_367986183.1 ImmA/IrrE family metallo-endopeptidase -
  AB1F57_RS05040 (AB1F57_05040) - 995575..995940 (-) 366 WP_155971656.1 helix-turn-helix domain-containing protein -
  AB1F57_RS05045 (AB1F57_05045) - 996549..996749 (+) 201 WP_367986184.1 hypothetical protein -
  AB1F57_RS05050 (AB1F57_05050) - 996761..996967 (-) 207 WP_024404519.1 hypothetical protein -
  AB1F57_RS05055 (AB1F57_05055) - 997029..997241 (+) 213 WP_024381154.1 hypothetical protein -
  AB1F57_RS05060 (AB1F57_05060) - 997497..997841 (+) 345 WP_367986186.1 hypothetical protein -
  AB1F57_RS05065 (AB1F57_05065) - 997904..998167 (+) 264 WP_172045093.1 hypothetical protein -
  AB1F57_RS05070 (AB1F57_05070) - 998172..998360 (+) 189 WP_367986187.1 hypothetical protein -
  AB1F57_RS05075 (AB1F57_05075) - 998362..998616 (+) 255 WP_367986188.1 hypothetical protein -
  AB1F57_RS05080 (AB1F57_05080) - 998619..998774 (+) 156 WP_367986189.1 hypothetical protein -
  AB1F57_RS05085 (AB1F57_05085) - 998767..999648 (+) 882 WP_367986191.1 replication initiator protein A -
  AB1F57_RS05090 (AB1F57_05090) - 999635..999826 (+) 192 WP_367986192.1 hypothetical protein -
  AB1F57_RS05095 (AB1F57_05095) - 999827..1000042 (+) 216 WP_024399038.1 hypothetical protein -
  AB1F57_RS05100 (AB1F57_05100) - 1000042..1000209 (+) 168 WP_367986193.1 hypothetical protein -
  AB1F57_RS05105 (AB1F57_05105) - 1000213..1000776 (+) 564 WP_367986194.1 helix-turn-helix domain-containing protein -
  AB1F57_RS05110 (AB1F57_05110) - 1000773..1001024 (+) 252 WP_367986195.1 DUF3310 domain-containing protein -
  AB1F57_RS05115 (AB1F57_05115) - 1001006..1001305 (+) 300 WP_367986196.1 DUF1372 family protein -
  AB1F57_RS05120 (AB1F57_05120) - 1001302..1001550 (+) 249 WP_367986197.1 hypothetical protein -
  AB1F57_RS05125 (AB1F57_05125) - 1001519..1001767 (+) 249 WP_367986198.1 hypothetical protein -
  AB1F57_RS05130 (AB1F57_05130) - 1001760..1002326 (+) 567 WP_367986199.1 hypothetical protein -
  AB1F57_RS05135 (AB1F57_05135) - 1002326..1002517 (+) 192 WP_367986200.1 hypothetical protein -
  AB1F57_RS05140 (AB1F57_05140) - 1002510..1003046 (+) 537 WP_367986201.1 DUF1642 domain-containing protein -
  AB1F57_RS05145 (AB1F57_05145) - 1003170..1003535 (+) 366 WP_367986202.1 YopX family protein -
  AB1F57_RS05150 (AB1F57_05150) - 1003539..1003736 (+) 198 WP_167786250.1 hypothetical protein -
  AB1F57_RS05155 (AB1F57_05155) - 1003729..1003935 (+) 207 WP_367986203.1 hypothetical protein -
  AB1F57_RS05160 (AB1F57_05160) - 1003932..1004462 (+) 531 WP_367986204.1 helix-turn-helix transcriptional regulator -
  AB1F57_RS05165 (AB1F57_05165) - 1004539..1004949 (+) 411 WP_367986205.1 DUF1492 domain-containing protein -
  AB1F57_RS05170 (AB1F57_05170) - 1005045..1005635 (+) 591 WP_367986206.1 tyrosine-type recombinase/integrase -
  AB1F57_RS05175 (AB1F57_05175) - 1005849..1006178 (+) 330 WP_367986207.1 HNH endonuclease -
  AB1F57_RS05180 (AB1F57_05180) - 1006266..1006595 (+) 330 WP_318824131.1 P27 family phage terminase small subunit -
  AB1F57_RS05185 (AB1F57_05185) - 1006588..1008234 (+) 1647 WP_367986208.1 terminase TerL endonuclease subunit -
  AB1F57_RS05190 (AB1F57_05190) - 1008270..1008626 (+) 357 WP_367986210.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AB1F57_RS05195 (AB1F57_05195) - 1008628..1008903 (+) 276 WP_172043531.1 helix-turn-helix transcriptional regulator -
  AB1F57_RS05200 (AB1F57_05200) - 1009172..1009369 (+) 198 WP_367986212.1 hypothetical protein -
  AB1F57_RS05205 (AB1F57_05205) - 1009375..1010529 (+) 1155 WP_367986214.1 phage portal protein -
  AB1F57_RS05210 (AB1F57_05210) - 1010510..1011241 (+) 732 WP_367986215.1 head maturation protease, ClpP-related -
  AB1F57_RS05215 (AB1F57_05215) - 1011256..1012383 (+) 1128 WP_367986216.1 phage major capsid protein -
  AB1F57_RS05220 (AB1F57_05220) - 1012386..1012694 (+) 309 WP_367986217.1 phage gp6-like head-tail connector protein -
  AB1F57_RS05225 (AB1F57_05225) - 1012663..1012863 (+) 201 WP_367986218.1 hypothetical protein -
  AB1F57_RS05230 (AB1F57_05230) - 1012850..1013209 (+) 360 WP_367986219.1 phage head-tail adapter protein -
  AB1F57_RS05235 (AB1F57_05235) - 1013202..1013615 (+) 414 WP_367986221.1 hypothetical protein -
  AB1F57_RS05240 (AB1F57_05240) - 1013615..1014004 (+) 390 WP_367986222.1 hypothetical protein -
  AB1F57_RS05245 (AB1F57_05245) - 1014020..1014601 (+) 582 WP_367986223.1 major tail protein -
  AB1F57_RS05250 (AB1F57_05250) - 1014647..1014952 (+) 306 WP_367986224.1 hypothetical protein -
  AB1F57_RS05255 (AB1F57_05255) - 1015273..1015518 (+) 246 WP_367986225.1 hypothetical protein -
  AB1F57_RS05260 (AB1F57_05260) - 1015633..1019823 (+) 4191 WP_367986226.1 phage tail tape measure protein -
  AB1F57_RS05265 (AB1F57_05265) - 1019820..1020542 (+) 723 WP_367986227.1 phage tail protein -
  AB1F57_RS05270 (AB1F57_05270) - 1020543..1023812 (+) 3270 WP_367986228.1 phage tail spike protein -
  AB1F57_RS05275 (AB1F57_05275) - 1023822..1024001 (+) 180 WP_367986229.1 hypothetical protein -
  AB1F57_RS05280 (AB1F57_05280) - 1023998..1024537 (+) 540 WP_367986230.1 hypothetical protein -
  AB1F57_RS05285 (AB1F57_05285) - 1024557..1024709 (+) 153 WP_367986231.1 hypothetical protein -
  AB1F57_RS05290 (AB1F57_05290) - 1024713..1024991 (+) 279 WP_367986232.1 hypothetical protein -
  AB1F57_RS05295 (AB1F57_05295) - 1024993..1025235 (+) 243 WP_367986233.1 phage holin -
  AB1F57_RS05300 (AB1F57_05300) - 1025326..1026579 (+) 1254 WP_367986234.1 N-acetylmuramoyl-L-alanine amidase -
  AB1F57_RS05305 (AB1F57_05305) - 1026589..1027797 (+) 1209 WP_367986235.1 hypothetical protein -
  AB1F57_RS05310 (AB1F57_05310) - 1028162..1029346 (-) 1185 WP_170242263.1 chloride channel protein -
  AB1F57_RS05315 (AB1F57_05315) - 1029339..1029614 (-) 276 WP_105136911.1 chorismate mutase -
  AB1F57_RS05320 (AB1F57_05320) - 1030009..1030461 (-) 453 WP_105110414.1 flavodoxin -
  AB1F57_RS05325 (AB1F57_05325) - 1030557..1031501 (+) 945 WP_367986237.1 bifunctional oligoribonuclease/PAP phosphatase NrnA -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36573.75 Da        Isoelectric Point: 5.3223

>NTDB_id=1024693 AB1F57_RS05010 WP_280921716.1 991298..992299(+) (ccpA) [Streptococcus sp. ZY1909104]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIERLDYRPNAVARGLASKKTTTVGVVIPNIANAYFA
TLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEKQLPS
VNIDYAVASKDAVTLLAKNNKKIAFVSGPLVDDINGKVRFAGYKDGLQEAGLDFSEGLVFESKYKYEEGYALAERILNAG
ATAALVAEDEIAAGLLNGISDKGLSVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENREV
ILNHGIKVRKSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1024693 AB1F57_RS05010 WP_280921716.1 991298..992299(+) (ccpA) [Streptococcus sp. ZY1909104]
TTGAATACTGATGATACGGTAACGATATATGACGTTGCCCGCGAAGCCGGGGTCTCTATGGCGACCGTTTCCCGCGTTGT
CAATGGAAATAAGAACGTTAAGGAAAATACCCGCAAAAAAGTCTTAGAGGTCATCGAGCGCTTGGATTACCGTCCTAACG
CCGTTGCCCGTGGCTTGGCCAGCAAGAAGACGACGACTGTTGGTGTGGTTATCCCAAATATTGCTAACGCCTACTTTGCA
ACCCTGGCTAAGGGGATTGATGACATTGCTGATATGTATAAGTATAATATCGTCCTTGCCAATAGCGATGAGAACGATGA
AAAAGAGATTAATGTGGTCAACACCCTCTTTTCAAAACAGGTGGATGGTATCATTTTTATGGGCTACCATTTGACAGATA
AGATTCGTGCGGAGTTTTCTCGTTCACGTACACCGATCGTTCTGGCTGGTACGGTTGATTTGGAAAAACAATTGCCGAGC
GTTAACATTGACTACGCTGTAGCAAGCAAGGATGCGGTTACCCTGTTGGCTAAAAACAACAAGAAAATCGCCTTTGTATC
TGGACCGTTGGTTGATGATATCAATGGCAAGGTCCGCTTTGCTGGTTATAAGGATGGCTTGCAAGAAGCGGGCTTGGACT
TTAGCGAAGGCCTAGTCTTTGAATCTAAGTATAAGTATGAAGAAGGCTATGCTCTTGCTGAACGTATCTTGAACGCAGGT
GCGACGGCAGCCTTGGTGGCAGAAGATGAAATTGCAGCAGGTCTCTTGAATGGTATTTCAGACAAGGGTCTCAGCGTTCC
AGAAGATTTTGAAATCATTACAAGCGATGATTCACTGGTGACCAAGTTTACACGACCTAACCTGACTTCTATCAATCAGC
CATTGTATGATATTGGTGCCATTGCCATGCGGATGCTGACCAAAATCATGCACAAGGAAGAATTGGAAAACCGTGAAGTC
ATTCTGAATCACGGCATTAAGGTTCGCAAATCTACCAAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

80.18

100

0.802
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.979

100

0.79
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.912

99.399

0.586

Multiple sequence alignment