Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Regulator
Locus tag   DQN79_RS00230 Genome accession   NZ_LS483435
Coordinates   47199..47798 (-) Length   199 a.a.
NCBI ID   WP_052437422.1    Uniprot ID   A0A0B5CJC7
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 42199..52798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS00205 (NCTC11050_00041) hpnE 42875..44176 (-) 1302 WP_003774223.1 hydroxysqualene dehydroxylase HpnE -
  DQN79_RS00210 (NCTC11050_00042) hpnD 44173..45021 (-) 849 WP_041961501.1 presqualene diphosphate synthase HpnD -
  DQN79_RS00215 (NCTC11050_00043) - 45121..45600 (-) 480 WP_111751051.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  DQN79_RS00220 (NCTC11050_00044) pilK 45611..46102 (-) 492 WP_003774216.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DQN79_RS00225 (NCTC11050_00045) - 46102..47193 (-) 1092 WP_041961503.1 PilW family protein -
  DQN79_RS00230 (NCTC11050_00046) pilV 47199..47798 (-) 600 WP_052437422.1 type IV pilus modification protein PilV Regulator
  DQN79_RS00235 (NCTC11050_00047) - 47800..48528 (-) 729 WP_041961504.1 Tfp pilus assembly protein FimT/FimU -
  DQN79_RS00240 (NCTC11050_00048) dnaB 48645..50057 (-) 1413 WP_003774207.1 replicative DNA helicase -
  DQN79_RS00245 (NCTC11050_00049) - 50149..50319 (-) 171 WP_040666303.1 rubredoxin -
  DQN79_RS00250 (NCTC11050_00050) - 50663..51769 (-) 1107 WP_003774200.1 acyl-CoA dehydrogenase family protein -
  DQN79_RS00255 (NCTC11050_00051) - 51882..52424 (-) 543 WP_003774197.1 carboxymuconolactone decarboxylase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21447.39 Da        Isoelectric Point: 4.9832

>NTDB_id=1024603 DQN79_RS00230 WP_052437422.1 47199..47798(-) (pilV) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MKINKYVGIGFQQQGFALIEVLISVVVLALGILALLATQLRSVGSVREAETQTIAAQAAQNLIEGMTANPQLELTGSDGV
WTKKKYDHYINVAAPNPVTDANGGYDTTNLALKQLKEFNAELNASKLGDMNVRATVCKTKDLKTAITIDPDTGDVSDWGC
DNSAGKVAIKIAWLVQPLSDKNTDKAQTVSYQTYIRDGE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=1024603 DQN79_RS00230 WP_052437422.1 47199..47798(-) (pilV) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGAAAATAAATAAATATGTGGGAATTGGATTCCAACAGCAGGGTTTTGCTTTAATTGAGGTTTTGATTTCTGTTGTGGT
CTTGGCTTTGGGTATTTTGGCATTGCTGGCAACACAGCTGCGTTCGGTAGGTAGTGTCAGGGAAGCTGAAACACAAACTA
TTGCCGCACAGGCTGCCCAAAATTTGATTGAGGGGATGACAGCCAATCCTCAATTGGAGTTAACTGGTAGCGATGGTGTT
TGGACTAAAAAAAAATATGATCATTATATTAATGTGGCAGCTCCAAATCCGGTGACAGATGCTAATGGTGGCTATGATAC
TACTAACCTTGCTTTGAAACAGTTGAAAGAATTTAATGCCGAATTAAATGCAAGCAAGCTGGGTGATATGAATGTTAGAG
CGACGGTTTGTAAGACCAAAGATTTGAAAACAGCTATTACAATAGATCCGGATACTGGTGATGTTTCAGATTGGGGTTGT
GATAATAGTGCAGGTAAGGTGGCAATAAAAATTGCTTGGTTGGTTCAGCCTTTGTCAGACAAGAATACAGATAAGGCACA
AACGGTTAGTTATCAAACTTATATTCGAGACGGAGAGTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(13-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B5CJC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

38.342

96.985

0.372
  pilV/pilI Neisseria gonorrhoeae MS11

40.331

90.955

0.367