Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB3N44_RS05490 Genome accession   NZ_CP162195
Coordinates   1116315..1116941 (-) Length   208 a.a.
NCBI ID   WP_119914940.1    Uniprot ID   -
Organism   Enterobacter chuandaensis strain STK53-E     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111315..1121941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N44_RS05475 (AB3N44_05465) helD 1111552..1113606 (-) 2055 WP_406808315.1 DNA helicase IV -
  AB3N44_RS05480 (AB3N44_05470) - 1113730..1114176 (+) 447 WP_023335159.1 YccF domain-containing protein -
  AB3N44_RS05485 (AB3N44_05475) yccS 1114196..1116358 (+) 2163 WP_080327668.1 YccS family putative transporter -
  AB3N44_RS05490 (AB3N44_05480) sxy/tfoX 1116315..1116941 (-) 627 WP_119914940.1 TfoX/Sxy family DNA transformation protein Regulator
  AB3N44_RS05495 (AB3N44_05485) sulA 1117159..1117668 (+) 510 WP_080327670.1 SOS-induced cell division inhibitor SulA -
  AB3N44_RS05500 (AB3N44_05490) ompA 1118023..1119078 (+) 1056 WP_108780329.1 porin OmpA -
  AB3N44_RS05505 (AB3N44_05495) matP 1119142..1119594 (-) 453 WP_023332611.1 macrodomain Ter protein MatP -
  AB3N44_RS05510 (AB3N44_05500) - 1119781..1121541 (+) 1761 WP_217479886.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23961.50 Da        Isoelectric Point: 9.2151

>NTDB_id=1024602 AB3N44_RS05490 WP_119914940.1 1116315..1116941(-) (sxy/tfoX) [Enterobacter chuandaensis strain STK53-E]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLKLSSFALNAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARESWLKMRAKN
NALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1024602 AB3N44_RS05490 WP_119914940.1 1116315..1116941(-) (sxy/tfoX) [Enterobacter chuandaensis strain STK53-E]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCGCCGTTGGGTGAAATTCACCATCGCGCGCT
GTTCGGCGGCTATACCCTGGCAGTGGATGATGCGGTTTTTGCCATGGTGTCAGACGGTGAGCTCTATCTTCGCGCCTGTG
AAGAAAGCGCGAAATACTGTGTCAAAAATGCTGCCTCTTTTTTGACGCTAATGAAGCGGGGCCGTCCGGTGCTTCTCAAC
TACTATCGCGTGGATGATGGGCTGTGGCAGGACAGGGAGCGTCTGCTTAAGCTCTCCTCATTTGCGCTCAATGCGGCAAG
GAAAGAGCGTTATCAGCGGCATCAGCGAAACCGCCTTAAAGATCTGCCAAACCTGACTTTTCAGCTGGAAGTGTTGCTCT
TCGAAGCAGGTATTACTAATGAAGAGACGCTGCGGGCGCTAGGGGCCAGGGAGAGCTGGCTGAAGATGCGGGCAAAAAAT
AATGCGCTCAGTATTAAAGTGCTCTTCGCGCTGGAAGGGGCCATTGAGGGGCTGCATGAGGCGGCACTCCCGGCAGGTAT
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567

Multiple sequence alignment