Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DQN52_RS02930 Genome accession   NZ_LS483426
Coordinates   541096..541683 (+) Length   195 a.a.
NCBI ID   WP_032827805.1    Uniprot ID   -
Organism   Kingella kingae strain NCTC10529     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 536096..546683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN52_RS02900 (NCTC10529_00568) - 536543..536926 (-) 384 WP_032827807.1 helix-turn-helix transcriptional regulator -
  DQN52_RS02905 (NCTC10529_00569) - 537039..537911 (+) 873 WP_003787905.1 SEL1-like repeat protein -
  DQN52_RS02910 (NCTC10529_00570) - 538008..538772 (-) 765 WP_003787903.1 ABC transporter permease -
  DQN52_RS02915 (NCTC10529_00571) - 538769..539677 (-) 909 WP_032827806.1 ABC transporter ATP-binding protein -
  DQN52_RS10895 - 539806..539952 (-) 147 WP_003787898.1 hypothetical protein -
  DQN52_RS02925 (NCTC10529_00573) - 540308..541090 (+) 783 WP_003787893.1 hypothetical protein -
  DQN52_RS02930 (NCTC10529_00574) ruvA 541096..541683 (+) 588 WP_032827805.1 Holliday junction branch migration protein RuvA Machinery gene
  DQN52_RS02935 (NCTC10529_00575) - 541694..543100 (+) 1407 WP_003787887.1 efflux transporter outer membrane subunit -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21036.42 Da        Isoelectric Point: 6.4840

>NTDB_id=1024367 DQN52_RS02930 WP_032827805.1 541096..541683(+) (ruvA) [Kingella kingae strain NCTC10529]
MISRLRGMLLEKMPPQIVIDVNGVGYELDVSMQTFYALPALGETVQLYTYLVVREDAHLLFGFGDASERTTFRQLIKVSG
IGAKTALGILSAMTTDELAQAIANEDVKRLSSAPGIGKKTAERMILELRGKLAHRGLGDLALFTPAADTDNRADVVSTLL
ALGYSEREAQAACKSLPNGVEVGEGVRLALKQLMK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1024367 DQN52_RS02930 WP_032827805.1 541096..541683(+) (ruvA) [Kingella kingae strain NCTC10529]
ATGATTAGTAGATTGCGTGGTATGTTGCTGGAAAAAATGCCACCACAAATTGTGATAGATGTAAACGGTGTGGGCTACGA
GTTGGACGTGTCTATGCAAACGTTTTACGCTTTGCCTGCTTTGGGCGAAACGGTGCAGCTTTATACGTATTTGGTGGTGC
GTGAAGACGCGCATTTGCTGTTTGGTTTTGGTGATGCGAGCGAGCGGACGACTTTTCGTCAGTTGATTAAAGTGAGCGGT
ATTGGCGCAAAAACTGCGTTGGGTATTTTGTCGGCGATGACAACCGATGAATTAGCGCAGGCGATTGCCAACGAAGATGT
GAAACGCTTGTCGTCTGCGCCAGGTATCGGCAAAAAAACGGCAGAACGCATGATTTTGGAATTGCGCGGCAAATTGGCGC
ACAGAGGTTTGGGCGATTTGGCTTTGTTTACGCCTGCTGCGGACACGGACAATCGTGCCGATGTGGTCAGCACCTTGCTG
GCGTTGGGCTATTCCGAGCGTGAAGCGCAAGCAGCCTGCAAATCGTTGCCCAACGGTGTGGAAGTGGGCGAGGGTGTGCG
TTTGGCATTGAAACAGTTAATGAAGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(150-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

36.869

100

0.374
  ruvA Streptococcus pneumoniae D39

36.869

100

0.374
  ruvA Streptococcus pneumoniae TIGR4

36.364

100

0.369
  ruvA Bacillus subtilis subsp. subtilis str. 168

33.971

100

0.364