Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DQN36_RS08685 Genome accession   NZ_LS483425
Coordinates   1744363..1744959 (-) Length   198 a.a.
NCBI ID   WP_111704406.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13737     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1739363..1749959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN36_RS08650 (NCTC13737_01703) - 1739423..1739728 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  DQN36_RS08655 (NCTC13737_01704) ruvX 1739740..1740159 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  DQN36_RS08660 (NCTC13737_01705) - 1740156..1740425 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  DQN36_RS08665 (NCTC13737_01706) spx 1740539..1740937 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  DQN36_RS08670 (NCTC13737_01707) recA 1741228..1742364 (-) 1137 WP_002992179.1 recombinase RecA Machinery gene
  DQN36_RS08675 (NCTC13737_01708) cinA 1742453..1743724 (-) 1272 WP_030126182.1 competence/damage-inducible protein A Machinery gene
  DQN36_RS08680 (NCTC13737_01709) - 1743793..1744353 (-) 561 WP_011018314.1 DNA-3-methyladenine glycosylase I -
  DQN36_RS08685 (NCTC13737_01710) ruvA 1744363..1744959 (-) 597 WP_111704406.1 Holliday junction branch migration protein RuvA Machinery gene
  DQN36_RS08690 (NCTC13737_01711) - 1744961..1746181 (-) 1221 WP_032461237.1 MDR family MFS transporter -
  DQN36_RS08695 (NCTC13737_01712) hexB 1746192..1748174 (-) 1983 WP_111704448.1 DNA mismatch repair endonuclease MutL Machinery gene
  DQN36_RS08700 (NCTC13737_01713) - 1748269..1749414 (-) 1146 WP_111704407.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21867.23 Da        Isoelectric Point: 6.2537

>NTDB_id=1024346 DQN36_RS08685 WP_111704406.1 1744363..1744959(-) (ruvA) [Streptococcus pyogenes strain NCTC13737]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKLALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1024346 DQN36_RS08685 WP_111704406.1 1744363..1744959(-) (ruvA) [Streptococcus pyogenes strain NCTC13737]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACAAATGGACTAGGCTATAT
TATCAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGATGCTCACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAACGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATTAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(152-196)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae R6

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae D39

67.005

99.495

0.667
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424